Transcript Information: R_Transcript_110974.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value1E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.4279082421619
Replicate 20.33840191147147
Replicate 30.92298210094387
Condition 2: 8 Hour
Replicate 10
Replicate 20.32763196836902
Replicate 30.4388301468665
Condition 3: 24 Hour
Replicate 10.53820500460552
Replicate 20
Replicate 30.64139793954278


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_110974.p1 GENE.R_Transcript_110974~~R_Transcript_110974.p1 ORF type:complete len:1365 (+),score=177.31,RVT_1|PF00078.23|1.5e-40,RVT_3|PF13456.2|9.8e-23,zf-RVT|PF13966.2|5.5e-14,Exo_endo_phos|PF03372.19|7.2e-06 R_Transcript_110974:1385-5479(+)
ATGAATCTCTTGAGCCTTAACTGTCGGGGGCTTGGCGATCCCCGAGCAGTTAAGGACCTTCGTGGGTTACTACGAAGGTGGAAGCCAGGGCTCGTGTTCTTATCGGAGACGAAGCTGAGTAGTTGTGAAATGGGCAGAGCTATGAAGAGGTTGGGTGATTTTGAAGGAGTTTTTGTTGATAGTATAGGACGTTCAGGGGGTTTGGCTTTGATGTGGACGAAGGAGTTACATGTTCAATTTTTGTCCAAGTCATTACATCACATAGATGTCAGTGTTCAGTTGACGGATCATACTACGGAGTGGCGATTTACGGGCATTTATGGTTGGCCAGAAGCAATGAATAAACATCTCACGTGTGAGTTGATCAAGGAGCTCAAACAACAACCAGGCCTCCCTTGGCTTTGCGGGGGCGACTTTAATGAAGTCTTCTTCAATTATGAAAAGAAAGGGGGGAACCCAAAGGATCAGAGGCTCTTAGATAATTTTTGTGATGCTTGTGACATAGCTGACTTGAGAGACTTGGACTATGCAGGCCACGATTTCACTTGGTGGAATGGCAGAGAGGGGGAGGCGAGTGTAGAGGAGAGGTTGGATAGATACATGTCAAATACTGACTGGGCCGCAGAATTTCCGAGCGCTGAGGTACTCCATGTAGATGAGAGTTTTTCTGATCATCTCCCTATTCTACTTAAACTCAATTTACATGGAAGGCGCGAGAGAAGGCAACGCAAGAAGCTCTTTCGTTTTGAGAATATGTGGGCAATGGAAGGGAGTTGTGAAGACTTAATTAAAAAAGTTTGGGGCAAAACACATGATGGTACGTGGGGGGAGTGTTGGACAGAGTGCATGGCAAAATGTCAACATGAACTTAGGCGGTGGAACTTTGAAGAGTTTGGTCATATCCAAACCAAAATAAAAAGGGTGCAAAGAGGCCTTGCTGATGAGCCTGACATACACCAACGCAAGTTCCTTCTACATGAACTAAGGGACCTGCGACGCAAGGAAGAGATCATGTGGTGGCAGCGTTCTCGCATCAATTTTCTACGGCACGGAGACTCCAACACTGCTTGGTTCCACGAGAGAGCAAATGTGCGCAAGAAAAAGAATTACATCTCCAAGTTACAAAACAAGGAAGGGCAAATAGTAGAGGAGGACGATAAACTGGAGGAGGTGATCATGGAACATTTTCAAGATATTTTCCAAGCGGCAGGGACTTACAACATCGAGCAGGTTATCCAAGGGGTGGAGACGAGGGTCACGGCAGATATGAATGAAGAGCTATGCAAGCCATATACCGCAGCGGAGATCTATGAGGCGCTGAGACAAATGCACCCTAGCAAGGCCCCGGGCCCGGACGGTATGAATGCTTTCTTTTTCCAAAAATTTTGGCCAATTGTGGGTGATTCAGTTGTGTCCTTAGTACTACTCATTCTCAATGGCCAAGATTTTCCTCCTGAAATAAACCATACTAATGTTGTGCTTATCGCCAAAAAGAAACGCCCAATTTTGGTGTCCGATTTCCGTCCTATTAGCTTATGCAATGTGGTCTTTAAAATTGCCACAAAAGCAATAGCTAATAGACTAAAATTTATTCTCCCATCTATTATATCAGAAAACCAAAGTGCGTTTACGCCGGGTCGTTTAATGAGTGACAACATTATGGTGGCCTATGAGACTTTCCATTCTATGCATTGCTATAATGGAAGTAGTGGGAGCTTGGCGTTGAAATTGGAGATGGAGAAGGCATATGATCGGGTGGAATGGAATTTCTTGGAGCAAATTATGCTGAAAATGGGACTTAATGAGCAATGGGTTCACATGATTATGAAGTGTGTCTCAACTGTATCTTATTCTTTTATGATAAATGGTGAACCAAAGGGTCATCTAAAACCCACTAGAGGACTCCGTCAAGGAGACCCTCTCTCCCCTTATCTTTTCTTATTGTGTGCTGAGGGGTTATCTAATTTGTTCACTTGTGCAGCGTCCACAGGATCTTTTGTAGGGCATAGAATATGCCAAGGTGCCCCCATGGTGACTCACCTATTATTTGCCGACGACACCATAATTTTTTCGAAGGCTGATGAGAGTCATGCACAACAAATTGCACATATGCTACAACTCTACGAGCACGCCTCTGGACAACAGGTGAACAAATTAAAGACCACGGTGTCATTTAGTAAGGGGGTACCACAACATACCCGAAGTATGATCACCCAAGTGCTTGGAGTTTCGGAGATAACTTCTCAAGACAAATATCTCGGCCTACCTACTCACATTGGTCGATCCAAAAAGAAGGCTTTTCTCCCATTGAAAGATCGCATCAAAGGAAAGCTCCAAGGATGGATGGAGAAATACCTCTCGTGGTCCGGTAAGGAGATACTTATTAAAGCGGTTGCCCAGGCCATACCGACCTATGCTATGAGTGTCTTCAAGCTCCCCGGGGAATTTTGCAATGAGCTAGAAGCCTTGGTGCGAAAATTTTGGTGGGGACATAAGGATGGTCGGAGGAAGATACATTGGATCAAGTGGGGAAAACTATGTAAGTCTAAGGTGGATGGGGGCTTGGGTTTTAGGGACCTTAAAGCTTTTAATGATGCCTTGCTTGTTAAGCATCTTTGGAGACTTTTGTGTGAACCACATTCTTTGAGTGCCAAGATTTTGCAAGCAAGATACTTCCCAGATGGTAACCTCCTTGAAGCGGCTTTGGGAACACTGCCAAGCTACATTTGGCGGAGTTTATGGGGTGTTCGAGATGTCCTCAAGACGGGATTGAGATGGATGATCGGCAACGGTGAAAGTGTGCATGTTTGGAATGATCCTTGGCTTCCTAGGCCCACTACTTTCAAGCCTATCCCAGCTCGCGCTCATATTAATCCATCTCTAAAAGTGGCGGATTTGATAGATAGAAATAAGGGTGAGTGGCGGGAGGACATTTTGAAGAATTTATTCTTACCAATGGACGTAGAACTCATAAAATCTATACCATTGTGTAACTTCTGGCCAGAAGATAAGTTTGTGTGGCACTACACTTCCTCGGGATGCTTCTCGGTTCGTTCGGCCTATCACTCGATTATAGAGCGCCGTGGGCTAGATGATCCTGGAGCAAGTGTTTCATCCCACAAAACCTTTTGGAAGAAATTGTGGAAGCTGGACATACCCCCAAGGATTAAAAATTTTGGGTGGAGGGCGGTGTCACAAGCTCTTCCAACAGGAGTGGCGGTGGCGAAAATAGTGCATAATGGGTTTGGTTGTAGTCTTTACGGTGCACAAGAGGATACCGATTTACATGCATTGATGGAATGCCCTTTGGCGCGTCGAGCTTGGGAGAAGAGTGGCTGGGAGAAATCTTTTTGGACTAAAAAATACAGGTGTGTTAGAGATTGGTGGGAAGATGTTTGGAATTCTCCTTTCCTGGGTGATTTTGGGGTCTTTCTAGCGGCAGCATGGGGAATATGGAATGAGCGTTGCAAGCTGTTATATGAGGAGGAGCACGAGTATGGTGAAAGGGTATGTGAGAATGCAAGAAAATTCGTGGAGCGTTACCGAGAGGCCAATGCCCGAACTGAGACTAGTAGTGGCGGGGTACAAGACCAGTGGGAGCCCCCTACGAATGGCCTTTGGAAGCTTAATGTTGATGCAGGGAAATTAGGGGAGTGGGGAAGGGGCTGGGGAATGGTGGTGCGTGATGGGGCTGGCGATATTGTGATGATGGGTGTACATCAGGAGCAGGGAATTCATAACATAGAGATAGAGGAGGCGCGTGCTCTTCTATATGGCCTAAAGCTTGCATGGGAGGCTGGTTATCGATCGATCATTGCGGAAAGTGATTGTCTCAGCATCATTTCCAAGCTCAAGAACAGACAAGAGATACGATCACCTCTCGGCTGCATCCTAGATGAAATTTTAGCATGGTCTAGTAAATTTGATTTTCTTTCTTGGTCTCATGTATGTAGGGAGGGCAATTATGTAGCCCATAATATAGCTAGGTTCCAACCTTTTGCGATTGAGGATAAAGTTTGGCTCGAAGATATGCCTACACACATTGTTGAGCTTGGGCATATTGATTTATGTAATCACCTAGCTAATATGAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_110974.p1 GENE.R_Transcript_110974~~R_Transcript_110974.p1 ORF type:complete len:1365 (+),score=177.31,RVT_1|PF00078.23|1.5e-40,RVT_3|PF13456.2|9.8e-23,zf-RVT|PF13966.2|5.5e-14,Exo_endo_phos|PF03372.19|7.2e-06 R_Transcript_110974:1385-5479(+)
MNLLSLNCRGLGDPRAVKDLRGLLRRWKPGLVFLSETKLSSCEMGRAMKRLGDFEGVFVDSIGRSGGLALMWTKELHVQFLSKSLHHIDVSVQLTDHTTEWRFTGIYGWPEAMNKHLTCELIKELKQQPGLPWLCGGDFNEVFFNYEKKGGNPKDQRLLDNFCDACDIADLRDLDYAGHDFTWWNGREGEASVEERLDRYMSNTDWAAEFPSAEVLHVDESFSDHLPILLKLNLHGRRERRQRKKLFRFENMWAMEGSCEDLIKKVWGKTHDGTWGECWTECMAKCQHELRRWNFEEFGHIQTKIKRVQRGLADEPDIHQRKFLLHELRDLRRKEEIMWWQRSRINFLRHGDSNTAWFHERANVRKKKNYISKLQNKEGQIVEEDDKLEEVIMEHFQDIFQAAGTYNIEQVIQGVETRVTADMNEELCKPYTAAEIYEALRQMHPSKAPGPDGMNAFFFQKFWPIVGDSVVSLVLLILNGQDFPPEINHTNVVLIAKKKRPILVSDFRPISLCNVVFKIATKAIANRLKFILPSIISENQSAFTPGRLMSDNIMVAYETFHSMHCYNGSSGSLALKLEMEKAYDRVEWNFLEQIMLKMGLNEQWVHMIMKCVSTVSYSFMINGEPKGHLKPTRGLRQGDPLSPYLFLLCAEGLSNLFTCAASTGSFVGHRICQGAPMVTHLLFADDTIIFSKADESHAQQIAHMLQLYEHASGQQVNKLKTTVSFSKGVPQHTRSMITQVLGVSEITSQDKYLGLPTHIGRSKKKAFLPLKDRIKGKLQGWMEKYLSWSGKEILIKAVAQAIPTYAMSVFKLPGEFCNELEALVRKFWWGHKDGRRKIHWIKWGKLCKSKVDGGLGFRDLKAFNDALLVKHLWRLLCEPHSLSAKILQARYFPDGNLLEAALGTLPSYIWRSLWGVRDVLKTGLRWMIGNGESVHVWNDPWLPRPTTFKPIPARAHINPSLKVADLIDRNKGEWREDILKNLFLPMDVELIKSIPLCNFWPEDKFVWHYTSSGCFSVRSAYHSIIERRGLDDPGASVSSHKTFWKKLWKLDIPPRIKNFGWRAVSQALPTGVAVAKIVHNGFGCSLYGAQEDTDLHALMECPLARRAWEKSGWEKSFWTKKYRCVRDWWEDVWNSPFLGDFGVFLAAAWGIWNERCKLLYEEEHEYGERVCENARKFVERYREANARTETSSGGVQDQWEPPTNGLWKLNVDAGKLGEWGRGWGMVVRDGAGDIVMMGVHQEQGIHNIEIEEARALLYGLKLAWEAGYRSIIAESDCLSIISKLKNRQEIRSPLGCILDEILAWSSKFDFLSWSHVCREGNYVAHNIARFQPFAIEDKVWLEDMPTHIVELGHIDLCNHLANMN*

Click here to download the sequence:
Link to NCBI Protein BLAST