Transcript Information: R_Transcript_111668.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value8E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6890799689441
Replicate 21.5042125671378
Replicate 31.0256748177382
Condition 2: 8 Hour
Replicate 11.0963820125632
Replicate 20.86773571324004
Replicate 32.1131725796868
Condition 3: 24 Hour
Replicate 11.4391461247218
Replicate 21.1850586866579
Replicate 31.6334107975296


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_111668.p1 GENE.R_Transcript_111668~~R_Transcript_111668.p1 ORF type:complete len:335 (+),score=28.13,DDE_Tnp_4|PF13359.2|9e-29 R_Transcript_111668:257-1261(+)
ATGGCTCGCTTACCATTGAGTAAACGAAAGAAGATTCTCGCAACATGTATAGTGATCTATAGGCAGATGATGATCATGGGAATAGAGACTATAGTTGAGCTCATATATCTCTTATCCATTATGAATGTTAAAGTCCCAACACCTATAGCCTATGTTTTTGATAATTCTACAGAAGAAAGATATTATGCTAGGCTTTTAAATCTCAGGCCAATGATCCAAGAAAGTGATATAGCGTGCTTGGATAATCTTAGGATGGATAGAGCATGCTTTCATAAATTGTGTGAGATGCTTAGGGATGTTGGTAGGCTACAAGAAACCAGGAATACAAGTTTACAGGAAATGGTTGCATTATTTCTATTCACACTTTCCCATGATACAAAAAACCGAAGAACACAACTGCATTTTAGAAGAAGTGGAGAGACAATATCTAGACACTTCAATTCGGTTCTACGTGCTGTTCTTAGATGTCACCATGTTTTATTAAGCAAACCTGAACCAGTGACGGAAAATTGTCAAGATGAGAGATGGAAGTGGTTTAAGAATTGCATAGGCGCTTTGGATGGAACACATATTAAGGTTCGCGTCGGGGAAAATGACAAAGTTAGATTCAGAAATAGAAAAAGTGAACTTACTACCAATGTTTTAGGCGTGTGCACAAGAGAGATGCAATTTATCTATGTGCTGCCTGGATGGGAGGATTCAGCACATGATAATAGAGTTCTTCGTGATGCACTTTCTAGAAAAAATCCCTTAAAAGTCCCTCAAGGGAATTACTATTTATGTGATGCTGGATATATGAACTGTGATGGATTTCTAACACCATTTAGAGGCCAAAGATATCATTTGAGTGTGTGGAAGAGGGGTGCTCAACCAACATCAGCTGAGGAATATTTTAACATGAAACATTCCCAAGCAAGGAATGTTATTGAAAGATGTTTTGGATTGCTTAAAATGAGATGGGGTATACTAAGGAACACTACTTGGTACTCTAGAAAGACTGGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_111668.p1 GENE.R_Transcript_111668~~R_Transcript_111668.p1 ORF type:complete len:335 (+),score=28.13,DDE_Tnp_4|PF13359.2|9e-29 R_Transcript_111668:257-1261(+)
MARLPLSKRKKILATCIVIYRQMMIMGIETIVELIYLLSIMNVKVPTPIAYVFDNSTEERYYARLLNLRPMIQESDIACLDNLRMDRACFHKLCEMLRDVGRLQETRNTSLQEMVALFLFTLSHDTKNRRTQLHFRRSGETISRHFNSVLRAVLRCHHVLLSKPEPVTENCQDERWKWFKNCIGALDGTHIKVRVGENDKVRFRNRKSELTTNVLGVCTREMQFIYVLPGWEDSAHDNRVLRDALSRKNPLKVPQGNYYLCDAGYMNCDGFLTPFRGQRYHLSVWKRGAQPTSAEEYFNMKHSQARNVIERCFGLLKMRWGILRNTTWYSRKTG*

Click here to download the sequence:
Link to NCBI Protein BLAST