Transcript Information: R_Transcript_111687.p1


Annotated TAIR IDATMG00860.1
Annotated Gene NameDNA/RNA polymerases superfamily protein
Annotated Gene Symbol(s)ORF158
Annotation TypeHomolog
Chromosome PositionchrM:235916-236392 | Forward length=158
E-Value4E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.74199028271214
Replicate 20.77764075615919
Replicate 30.78631980908202
Condition 2: 8 Hour
Replicate 10.99536036370915
Replicate 21.0907747239603
Replicate 30.49191356694816
Condition 3: 24 Hour
Replicate 10.97472171608139
Replicate 20.7969379906261
Replicate 30.73156736532539


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_111687.p1 GENE.R_Transcript_111687~~R_Transcript_111687.p1 ORF type:5prime_partial len:1107 (+),score=165.90,RVT_1|PF00078.23|1.4e-24,RVT_3|PF13456.2|2.6e-21,rve|PF00665.22|2.3e+03,rve|PF00665.22|3.4e-17,RNase_H|PF00075.20|2.4e-05 R_Transcript_111687:2-3322(+)
GGCACCTCAAACCTTGGAGGACAAGCTACTGTCGACAAGCTTAAGGAGTTAAACCTTGGAACCACCGGGGAACCACGACCAGTCTTCGTCAGCACATCGCTCTCACAAGAGGAGGAAGTGAAGTACACTTCTCTTTTATCTGAATTCAGGGACGTGTTTGCATGGACCTATAAGGAAATGCCTGGCTTGGACCCTAAGGTTGCAATGCATCGACTGGCCATCAGAAAGGAAGTTACCCCTAAAAAACAGCCCAGGCGACGTTTTCGTCCTGAGTTGATTCCAGAAATCGAGACGGAGGTCAATAAGTTGATTGATGCAGGTTTCATCCGGGAAGTCACATACCCAACATGGATCGCAAACATCGTGCCAGTGAGGAAGAAGAATGGCCAACTCCGTGTTTGTGTAGATTTCAGGGATTTAAATGAAGCTTGCCCAAAAGATGACTTCCCATTGCCGGTAACTGAGCTCATGATCGACGCCACCACAGGTCACGAGGCATTGTCTTTTATGGACTGCACTGCCGGATACAACCAAATCCTAATGGCGCCAGAAGATGAGGAAGCCACTGCCTTTCGAACTCCAAAAGGTATCTTCTGCTACAAAGTGATGCCGTTCGGATTGAAAAATGCGGGAGCAACTTACCAGCGCGCCATGCAAACAATCTTCGAAGATGTGATGCACAAGATAATTGAGTGTTATGTGGATGACTTAGTGGTCAAATCTAAGGCAAGGGTCGAGCACCTACAAGATCTCTGCAAGGTCTTTCAAAGGCTGAGGAAGGCTAAGCTCAAGATGAATCCACTCAAGTGCGCCTTTGGAGTCACATCTGGCAAGTTCTTAGGCTTCATTGTTCGTCACAGGGGAATCGAAATTGATCAATCCAAAATTGATGCAATTCAAAACATGCCTCCACCAAGGAACTTAAGAGAGCTTCGAGGGTTGCAAGGGCGCTTGGCGTACATAAGGCGGTTCATCTCAAATTTAGCGGGGCGATGCCAGCCTTTTAGCCATCTCATGAAGAAAAATAACTCTTTCATTTGGGATGATTCCTGTCAAAGGGCCTTCGATAGTATCAAGAGATATCTTTCAAGTCCACCAGTCCTAGGTGCTCCAATTCCAGGAAAACCGTTGATTTTGTATGTTGCTGCGCAGGAGCACTCATTAGGGGCATTATGTGCCCAAGAGGTTGAAAAAGGAAAAGAAAGAGCACTTTACTACCTCAGTCGCACACTTGTTGGAGCTGAGTTGAGATACTCACCAATAGAGAAAATGTGCCTCGCACTCTGCTTTGCCGTCCAGAAGCTAAGGCATTACTTCCAAGCACATACAGTGAGAGTAATCTCCAAAGCTGACCCTATCAAATACATCTTGTCAAGACCAGTTCTTTCAGGAAGGCTCGCCAAATGGGCAGTCCTCATTGAGCAATACGACATTGTTTATGTGCCCCAAAAGGCAGTAAAGGGTCAAGCCTTGGCAGATTTCCTAGCCGATCATCCAATTCCTGCTGAATGGGAGTTGTCGGATGATCTTCCAGGTGAAGACATATTCTTTGTAGAAGTTTTGCCTCCATGGGAGATGTACTTTGACGGCGTTGCACGTAAGGATGGTGCTGGGGCTGGAGTCATCTTTATCTCCCCTGAAAAGCACATTTTACCTTACTCATTTGTGCTGACAAATCTGTGCTCGAACAACATGGCGGAGTACCAAGCGCTCATTCTGGGGCTAGAAATGGCGATTGAAATGGGCATAAAAGACCTTGATGTCTATGGAGATTCCAAGCTAGTGATCAACCAACTACTCAACGAGTTCGAGGTGAAAAAAGATAGTCTGTTGCCTTTTCATAAATATGCCTCACATTTGCTGTCTAAGATTGACATTGTAAGGCTGGAACACGTTCCTAGGAGTACCAATAAGATGGCTGACGCATTGGCAAATCTCGCAGCCACTTTGGCACTGGCGGCAAAAGGCGTCACTACTGTTCCAGTATGCAACAAATGGGTCGTGCCTTCCCTCTACACAGGAATCTTAGATGAGTCTAACGTCATATCGGTATGTGAAATCAATAAAGAAGATTGGCGGCAGCCGCTCATTGATTACTTGGAGCATGGAAAACTCCCAATTGATCCAAGGCATAAGGTAGAGATTCGGCGACGAGCTTCTCGATTCATATACTACAAAGGCACACTCTACAGGCGATCATTCCATGGGCTATGGCTCCGGTGCTTGGGAGAAGAGGAGGCGCGACAAGCGATGGAGGAAGCTCACTCCGGCATCTGTGGTGCTCATCAGTCTGGTCCAAAACTCTATGATCGAGTCAAAAGAATGGGCTATTTTTGGCAAACCATGGTTGAAGATTGTATGAAATATGCCAAAAGGTGCGCTGCGTGCCAGTTCCATGCAAACTTCATTCACCAACCGCCAGAACCATTGCATCCAACAGTATCATCCTGGCCTTTTGAAGCATGGGGTCTAGATGTTGTAGGGCCTATCACACCAAAGTCGTCAGGGGGACATGCATACATCCTGGCGGCAACTGACTATTTCTCTAAGTGGGCTGAGGCTGTTGCACTTCGAGAAGTCAAGAAAGAAAACGTGGCAAACTTCATCAGGACGCACATCATCTATCGCTATGGTGTTCCTCGATACATCCTGACTGACAATGGTACTCCATTCGTTAACAAGCTGGTGGACAACCTATGCGAGAAGTTCAATTTTATTCAGCGAACATCATCCATGTACAATGCACCTGCAAATGGACTTGCCGAGGCTTTCAACAAGACACTTTGCAATCTACTAAGCAAGGTAGTAAAAAAGTCACAAAAAGACTGGCATGACAAACTTGGAGAAGTACTATGGGCATACAGAACTTCATATAAGACTCCTACTCAATCCACTCCTTATGCGCTAGTGTATGGCGTCGAGGCGGTCCTCCCCCTCGAACTTCAAATACCATCACTACGAGTTGCCATCCAGGAAGGTCTCGCAGAAGGTGAAAATGACAAACTTCGCTTGGATGAGTTGGAAGCATTGGATGAGAAGAGATTGCAGGCTCAACAAAAGCTGGAATGCTATCAAGCTCGTCTATCTCGGGCATTTAACAAGAAGGTGAAACCACGTTCCTTCCAAGCTGGAGATCTGGTGCTAGCAGTAAGAAGACCAATCATCACCAATCGGAAAACTGGGAGCAAGTTCACTTCAAAGTGGGATGGCCCCTATGTTGTCCAAGAAGTATACTCAAACGGTGCATACAAGATCGTGGATGAAAAGGGATTGCAAATCGGCCCGATCAATGGAAAATTCTTGAAGCTTTACTATCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_111687.p1 GENE.R_Transcript_111687~~R_Transcript_111687.p1 ORF type:5prime_partial len:1107 (+),score=165.90,RVT_1|PF00078.23|1.4e-24,RVT_3|PF13456.2|2.6e-21,rve|PF00665.22|2.3e+03,rve|PF00665.22|3.4e-17,RNase_H|PF00075.20|2.4e-05 R_Transcript_111687:2-3322(+)
GTSNLGGQATVDKLKELNLGTTGEPRPVFVSTSLSQEEEVKYTSLLSEFRDVFAWTYKEMPGLDPKVAMHRLAIRKEVTPKKQPRRRFRPELIPEIETEVNKLIDAGFIREVTYPTWIANIVPVRKKNGQLRVCVDFRDLNEACPKDDFPLPVTELMIDATTGHEALSFMDCTAGYNQILMAPEDEEATAFRTPKGIFCYKVMPFGLKNAGATYQRAMQTIFEDVMHKIIECYVDDLVVKSKARVEHLQDLCKVFQRLRKAKLKMNPLKCAFGVTSGKFLGFIVRHRGIEIDQSKIDAIQNMPPPRNLRELRGLQGRLAYIRRFISNLAGRCQPFSHLMKKNNSFIWDDSCQRAFDSIKRYLSSPPVLGAPIPGKPLILYVAAQEHSLGALCAQEVEKGKERALYYLSRTLVGAELRYSPIEKMCLALCFAVQKLRHYFQAHTVRVISKADPIKYILSRPVLSGRLAKWAVLIEQYDIVYVPQKAVKGQALADFLADHPIPAEWELSDDLPGEDIFFVEVLPPWEMYFDGVARKDGAGAGVIFISPEKHILPYSFVLTNLCSNNMAEYQALILGLEMAIEMGIKDLDVYGDSKLVINQLLNEFEVKKDSLLPFHKYASHLLSKIDIVRLEHVPRSTNKMADALANLAATLALAAKGVTTVPVCNKWVVPSLYTGILDESNVISVCEINKEDWRQPLIDYLEHGKLPIDPRHKVEIRRRASRFIYYKGTLYRRSFHGLWLRCLGEEEARQAMEEAHSGICGAHQSGPKLYDRVKRMGYFWQTMVEDCMKYAKRCAACQFHANFIHQPPEPLHPTVSSWPFEAWGLDVVGPITPKSSGGHAYILAATDYFSKWAEAVALREVKKENVANFIRTHIIYRYGVPRYILTDNGTPFVNKLVDNLCEKFNFIQRTSSMYNAPANGLAEAFNKTLCNLLSKVVKKSQKDWHDKLGEVLWAYRTSYKTPTQSTPYALVYGVEAVLPLELQIPSLRVAIQEGLAEGENDKLRLDELEALDEKRLQAQQKLECYQARLSRAFNKKVKPRSFQAGDLVLAVRRPIITNRKTGSKFTSKWDGPYVVQEVYSNGAYKIVDEKGLQIGPINGKFLKLYYP*

Click here to download the sequence:
Link to NCBI Protein BLAST