Transcript Information: R_Transcript_112051.p2


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value3E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.18530924827126
Replicate 20.74606143611211
Replicate 30.11627785581803
Condition 2: 8 Hour
Replicate 10
Replicate 20.34052104326679
Replicate 30.73712124346749
Condition 3: 24 Hour
Replicate 10.23307418505283
Replicate 20.11195562888618
Replicate 30.33331529980047


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_112051.p2 GENE.R_Transcript_112051~~R_Transcript_112051.p2 ORF type:5prime_partial len:197 (+),score=37.01,rve|PF00665.22|3.3e-24,gag_pre-integrs|PF13976.2|8.6e-11,gag_pre-integrs|PF13976.2|1.8e+03 R_Transcript_112051:3-593(+)
TCATCATCTATCCCTAATTCTGAGAACACTCAGTTATGGCACATGCGTCTGGGCCACATGAGTGAAAAGGGAATGACTGTTCTAAGCAAGAGAGGTCTCCTTGGTGATCAAGGCACTGGTAAGCTCGAGTTCCGTGAGCATTGTGTGTTTGGGAAACAAAAGAAGGTCAGTTTCTCTACAGCTATTCATCGTACTAAAGGTATCCTTGATTACATACATTCTGATTTATGGGGACCATCTAAAGTTGCCTCTATTAGTGGTAAACGTTATATGATGACTATTGTTGATGATTATTCTCGTAAAGTCTGGGTTTATTTTTTGAGACATAAAAATGAAGCATTTCCTACTTTTAAGAAGTGGAAAACTCTTGTTGAGAACCAGACTGAGAGAAAAGTCAAAAAGCTTAGAACTGATAATGGATTGGAGTTTTGTGAGAGTGACTTCAATGAATTTTGTGCAACCAATGGCATTGCTAGACATGAAAGCCTTCCAAGAAGGCCCCAGCAAAATGGTGTTGCAGAACGAATTAATAGAACTATTTTGGAGAGAGCTCGTTGTATGCTTTCAAATTCTGGGTTATGGAACCGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_112051.p2 GENE.R_Transcript_112051~~R_Transcript_112051.p2 ORF type:5prime_partial len:197 (+),score=37.01,rve|PF00665.22|3.3e-24,gag_pre-integrs|PF13976.2|8.6e-11,gag_pre-integrs|PF13976.2|1.8e+03 R_Transcript_112051:3-593(+)
SSSIPNSENTQLWHMRLGHMSEKGMTVLSKRGLLGDQGTGKLEFREHCVFGKQKKVSFSTAIHRTKGILDYIHSDLWGPSKVASISGKRYMMTIVDDYSRKVWVYFLRHKNEAFPTFKKWKTLVENQTERKVKKLRTDNGLEFCESDFNEFCATNGIARHESLPRRPQQNGVAERINRTILERARCMLSNSGLWNR*

Click here to download the sequence:
Link to NCBI Protein BLAST