Transcript Information: R_Transcript_112224.p1


Annotated TAIR IDAT5G27270.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)EMB976
Annotation TypeOrtholog
Chromosome Positionchr5:9605650-9609625 | Forward length=1038
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.5389470684254
Replicate 23.489581208311
Replicate 33.892648218954
Condition 2: 8 Hour
Replicate 14.2753097526936
Replicate 25.0108418691732
Replicate 36.3047611118431
Condition 3: 24 Hour
Replicate 15.0374273562189
Replicate 23.7685456367653
Replicate 35.1091747635148


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_112224.p1 GENE.R_Transcript_112224~~R_Transcript_112224.p1 ORF type:complete len:1071 (+),score=179.48,PPR_2|PF13041.2|1e-07,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|5.9e-05,PPR_2|PF13041.2|2.7e-05,PPR_2|PF13041.2|9.4e-05,PPR_2|PF13041.2|0.021,PPR_2|PF13041.2|0.37,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|0.6,PPR_2|PF13041.2|41,PPR_2|PF13041.2|1.1e+03,PPR_2|PF13041.2|7.4e-06,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|5.5e-09,PPR_2|PF13041.2|6e-11,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|0.028,PPR|PF01535.16|0.00015,PPR|PF01535.16|2.4e+02,PPR|PF01535.16|0.7,PPR|PF01535.16|0.0015,PPR|PF01535.16|0.00053,PPR|PF01535.16|0.00033,PPR|PF01535.16|0.0055,PPR|PF01535.16|44,PPR|PF01535.16|4.2,PPR|PF01535.16|2.4,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.4,PPR|PF01535.16|42,PPR|PF01535.16|4.3e-06,PPR|PF01535.16|3e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.069,PPR|PF01535.16|0.022,PPR|PF01535.16|0.038,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|77,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|51,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|23,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|56,PPR_3|PF13812.2|0.004,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|92,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|16,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|73,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|88,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|0.098,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|0.83,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|4.2e+03,PPR_1|PF12854.3|0.78,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|0.23,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|0.014,TPR_12|PF13424.2|7.7e+03,TPR_12|PF13424.2|0.85,TPR_12|PF13424.2|0.0036,TPR_12|PF13424.2|0.00095,TPR_12|PF13424.2|1.2e+04,TPR_12|PF13424.2|65,TPR_12|PF13424.2|0.28,TPR_12|PF13424.2|83,TPR_12|PF13424.2|0.36,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1.1e+02,TPR_14|PF13428.2|5.6,TPR_14|PF13428.2|8.7e+02,TPR_14|PF13428.2|16,TPR_14|PF13428.2|22,TPR_14|PF13428.2|15,TPR_14|PF13428.2|1.1e+02,TPR_16|PF13432.2|15,TPR_16|PF13432.2|84,TPR_16|PF13432.2|0.028,TPR_16|PF13432.2|1.6e+03,TPR_16|PF13432.2|1.1e+02,TPR_16|PF13432.2|64,TPR_16|PF13432.2|1.1,TPR_16|PF13432.2|4.9,TPR_19|PF14559.2|1e+03,TPR_19|PF14559.2|0.0021,TPR_19|PF14559.2|1.6e+02,TPR_19|PF14559.2|56,TPR_19|PF14559.2|67,TPR_19|PF14559.2|1.6e+03,TPR_19|PF14559.2|3.4e+03,TPR_19|PF14559.2|1.9e+03,TPR_19|PF14559.2|2.2e+03,TPR_19|PF14559.2|6.3e+02,TPR_19|PF14559.2|35,TPR_19|PF14559.2|1.1e+03,TPR_11|PF13414.2|5.7,TPR_11|PF13414.2|0.25,TPR_11|PF13414.2|0.0085,TPR_11|PF13414.2|2.9e+02,TPR_11|PF13414.2|89,TPR_11|PF13414.2|8.3,TPR_11|PF13414.2|8.9e+02,TPR_11|PF13414.2|20,TPR_1|PF00515.24|4.9e+03,TPR_1|PF00515.24|1e+03,TPR_1|PF00515.24|11,TPR_1|PF00515.24|6.2,TPR_1|PF00515.24|8.1,TPR_1|PF00515.24|27,TPR_1|PF00515.24|9,TPR_1|PF00515.24|34,TPR_1|PF00515.24|84,TPR_1|PF00515.24|9.7e+03,TPR_7|PF13176.2|1.4e+03,TPR_7|PF13176.2|1.9e+02,TPR_7|PF13176.2|58,TPR_7|PF13176.2|88,TPR_7|PF13176.2|0.38,TPR_7|PF13176.2|3.2e+03,TPR_7|PF13176.2|8.6e+02,TPR_7|PF13176.2|1.5e+03,TPR_7|PF13176.2|2.1e+03,TPR_8|PF13181.2|2.5e+02,TPR_8|PF13181.2|2.1e+02,TPR_8|PF13181.2|4.8,TPR_8|PF13181.2|0.47,TPR_8|PF13181.2|1.4e+02,TPR_8|PF13181.2|6.1e+03,TPR_8|PF13181.2|19,TPR_8|PF13181.2|6.5e+03,TPR_8|PF13181.2|2.7e+02,TPR_8|PF13181.2|8.1e+03,TPR_8|PF13181.2|3.9e+02,TPR_8|PF13181.2|19,ANAPC3|PF12895.3|1.5e+03,ANAPC3|PF12895.3|0.18,ANAPC3|PF12895.3|16,ANAPC3|PF12895.3|5.1e+02,ANAPC3|PF12895.3|1.4e+02,ANAPC3|PF12895.3|56,ANAPC3|PF12895.3|3.7e+03 R_Transcript_112224:347-3559(+)
ATGGATTCCTTAAATTCCTCCTTCCTCTCATCAATCCCACTCTCCCTCAAACCTAAAACTCTCAGTAACAAAAACCCTCCCACCACAATCATCACCTTCACTCTTCACTGTTCCGTATCTCCAGACCCATGGTCTCTCAGCGACGGCAACCTCCACAAACCCAAACCCCGTTCCAAGAACCCTAAAAACCCACTTTCCGACGACAATGCTCGTCGCATAATCAAAGCCAAGGCACGCTATCTCAGCACCTTACGTCGCAACCAGGGTCCACGTGCTCAGACCCCCAAGTGGATTCGCCGGTCTCCGGAGCAGATGGTCCAGTACTTGCAAGACGACCGTAACGGCCATCTTTACGGCAAACATGTCGTTGCCGCTATTCGTGCAGTACGCAGCTTGTCCCAGAAACCCCAAGGTAGTTATGATATGAGGAAAGTGATGGCTTCTTTTGTTGCTAAGCTTAGTTTTAGAGAGATGTGTATTGTGTTGAAGGAACAAAAGGGGTGGGCCCAGGTCCGTGACTTCTTTGCTTGGATGAAATTGCAGCTGTGCTACCGTCCTAGTGTAATTGCCTATACCATTGTCTTACGTGCATATGGTCAAGTTGGGAAGATTAAGCTGGCTGAAGAGACCTTTTTGGAAATGCTTGATGCCGGATGTGAACCTGATGAAATTGCTTGTGGCACTATGCTCTGTACATATGCTCGATGGGGACGTCATAAAGCTATGTTATCATTCTATCCTGCTGTGCTGGATAGGGGTGTTGTACTTTCTGTTTCAGTTTATAATTTCATGCTGTCATCCTTGCAAAAGAAGTCACTCCATCAAAATGTAGTACAGATATATCGAGACATGGTCAATAGGGGAGTGTTACCCAATCAATTTACCTTCACTGTAGCTATCTGCTCACTAATTAAAGAGGGTCTTGTTGAGGAGGGCTTGATGGCATTCAATAGGATGAAGAGCTTTGGCTTTGTGCCTGAGGAAGTTACTTACAGCCTTCTTATTACATCAAAGGTGAAAGAAGGTAAACAGGAGGAAGCATTGAGACTTTATGAAGAAATGCGATCACGTGACATACTTCCAAGTAATTTTACTTGTGCTTCACTTCTAACTCTCTATTACAAGAGTGGAGATTACTCGAAGGCCCTGTCTCTTTTTTCAGAGATGGAAAGGTACAAAATCCATGCTGATGAAGTCATTTACGGTTTACTGATACGTATATATGGCAAGCTTGGTCTTTATGATGATGCAGAAAAAACTTTTGCCGAGGCTGAGCGATTGGGTCAATTGAGTGATGAAAAGACGTATTTAGCAATCGCTCAAGTTCATCTTACCATGGGGGACTTTGCTAAAGCATTAAATTATATGGAGCTCATGAGGTCTCGAAATATATGGTTCTCTAGATTTGCCTATACTATCTTATTGAAGTGTTATGTGACGAAGGGGGATCTAGGATCTGCTGAACTAACATTTCAGTCTCTGTTCAAGACTGGACTTCCTGATTCAGGATCTTGTAATGACATGCTCAAAATGTACATCAGACAAGGATTACTTGAGAAGGCTAAGGTTCTCATTGCTCAGATAAGAAAAGAGAGTATCGTATTTGACGAGGAGCTGTGCAGGACAGTGATGAAGGTATACTCAAAAGAGGGAATGCTTGAAGAAGTTGAGCAGTTGATGCAAGAGATAAGAGAAAAGGGATTGTTGGAATATAGCAGCTTCCTTCGAACTGTTGCTTTGATTTTGCATGCAGGCGGTGCAAATTGTGAAAGAGAAAAGGGCACATTGTTAGCCCCTGGATTGCCCGAAACTAATGCCCTGGAGCTTATGCTTGGTCTGTATTTGGCAACTGGCAATGGCATGATGATTGAACGCACCCTTGATTTTTTGCTTGACACTCCTGATGGCTTGTCTGCTGTAAATCAGCTGATTGGAAAATATGTCCGTGAAGGTGATTCATCCAAAGCTGAAATTCTGTATAATCTCTTAATAAAAGGAGATCCAAGACTTGATGATGGAATCTTGGCTTCTATGATTACTTTATATGGGAAACAACAGAAGCTGGAGAGAGTGAGAGAACTGTTTTCAGCTGCAGCCAATCCTGCTAAATATGGAACTGAAGTATACAATTCAATGATTGATGCCTGTGCTAAATGTGGCAAACCTGAGGAGGCTTACAATCTTTACATGCAGTGCACGGACAAAGGAAAGGATGTGAGCCCCGTGGCCATTAGTGTCCTTGTTAACACACTAACAATCCATGGGATGCATCAAGAGGTAGTGGATGTTATAAACAGTAGTTTCCATGGGAACATGATGCTTGACACCGTTGCATACAATACCTTTATCAAGGCGATGTTAGAAGCAGGAAAACTGCATTTTGCAACCAATATATATGATCGCATGCTTTCCAGGGGAGTTTCTCCATCAATTCAGACATATAGCACTATGATCAGTGTTTATGGAAGACAAAGGAAGTTAGACAAGGCAGTAGAGATGTTCAACATGGCACAGAATGCTGGCATACCTCTGGATGCGAAAGCATACACCAATCTAATAAGCATATATGGGAAATTTGGGAAGGCGCAGGAGGCATCTGATTTATTTGTGAAGATGCGGGAAGGGGGTGTAAAACCTGGAAAGATAAGCTACAATGTCATGATCAATGTGTACGGTGCTGCAGGACTTTATTATGAGGCAGAGGAACTTTTCCAGGCTATGCAAAAAGACGGTCTTCGTCCTGATTCCTTGACCTATCTTGCCCTTATGAGAGCATACACAACGAGTATGAAGTATCTAGAAGCAGAACAAGTCATAATCTCGATGCAGAAAGAAGGGATACATCCGTCCTGTGCTCATTTTGATCTCCTAATGTCAGTCTATGCTAATGCTGGCTTAATTGAGGAAGCTGAAAGGGTTTTCAAAACTATACTTGCATCTGGATTGAAGCCTGACCTAGTATGTTATAGGACCTTATTAAGGATTTACCTGGACCATGGACGTGTAGATGAAGGAATATCCTTTTTTGAAAGAATTGAAGAATCTGTGGAACCAGACAGGTTTATTATGAGCGCTGCTGTATGCCTGTACAGATCTACTGGACAGCATCTTAGAGCAGAAGCTATAACAAGCTCCATGAACGATTTGGGAATTTCATTTTTGAGAGGCCTTAACATTGGATCCAAGAAGAGAATTACCTGGAGACAAAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_112224.p1 GENE.R_Transcript_112224~~R_Transcript_112224.p1 ORF type:complete len:1071 (+),score=179.48,PPR_2|PF13041.2|1e-07,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|5.9e-05,PPR_2|PF13041.2|2.7e-05,PPR_2|PF13041.2|9.4e-05,PPR_2|PF13041.2|0.021,PPR_2|PF13041.2|0.37,PPR_2|PF13041.2|1.6,PPR_2|PF13041.2|0.6,PPR_2|PF13041.2|41,PPR_2|PF13041.2|1.1e+03,PPR_2|PF13041.2|7.4e-06,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|2.4e-06,PPR_2|PF13041.2|5.5e-09,PPR_2|PF13041.2|6e-11,PPR_2|PF13041.2|0.022,PPR_2|PF13041.2|0.00012,PPR_2|PF13041.2|0.028,PPR|PF01535.16|0.00015,PPR|PF01535.16|2.4e+02,PPR|PF01535.16|0.7,PPR|PF01535.16|0.0015,PPR|PF01535.16|0.00053,PPR|PF01535.16|0.00033,PPR|PF01535.16|0.0055,PPR|PF01535.16|44,PPR|PF01535.16|4.2,PPR|PF01535.16|2.4,PPR|PF01535.16|0.0013,PPR|PF01535.16|3.4,PPR|PF01535.16|42,PPR|PF01535.16|4.3e-06,PPR|PF01535.16|3e+03,PPR|PF01535.16|0.0034,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|2.5e-05,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.069,PPR|PF01535.16|0.022,PPR|PF01535.16|0.038,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|8.6e+03,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|77,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.0055,PPR_3|PF13812.2|51,PPR_3|PF13812.2|8.7,PPR_3|PF13812.2|23,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|56,PPR_3|PF13812.2|0.004,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|92,PPR_3|PF13812.2|0.017,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|16,PPR_3|PF13812.2|0.071,PPR_3|PF13812.2|73,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|88,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|0.098,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|0.83,PPR_1|PF12854.3|1.5,PPR_1|PF12854.3|2.3e+03,PPR_1|PF12854.3|2.2e+03,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|4.2e+03,PPR_1|PF12854.3|0.78,PPR_1|PF12854.3|0.25,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|0.23,PPR_1|PF12854.3|0.0017,PPR_1|PF12854.3|2.7e+02,PPR_1|PF12854.3|0.32,PPR_1|PF12854.3|0.014,TPR_12|PF13424.2|7.7e+03,TPR_12|PF13424.2|0.85,TPR_12|PF13424.2|0.0036,TPR_12|PF13424.2|0.00095,TPR_12|PF13424.2|1.2e+04,TPR_12|PF13424.2|65,TPR_12|PF13424.2|0.28,TPR_12|PF13424.2|83,TPR_12|PF13424.2|0.36,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1.1e+02,TPR_14|PF13428.2|5.6,TPR_14|PF13428.2|8.7e+02,TPR_14|PF13428.2|16,TPR_14|PF13428.2|22,TPR_14|PF13428.2|15,TPR_14|PF13428.2|1.1e+02,TPR_16|PF13432.2|15,TPR_16|PF13432.2|84,TPR_16|PF13432.2|0.028,TPR_16|PF13432.2|1.6e+03,TPR_16|PF13432.2|1.1e+02,TPR_16|PF13432.2|64,TPR_16|PF13432.2|1.1,TPR_16|PF13432.2|4.9,TPR_19|PF14559.2|1e+03,TPR_19|PF14559.2|0.0021,TPR_19|PF14559.2|1.6e+02,TPR_19|PF14559.2|56,TPR_19|PF14559.2|67,TPR_19|PF14559.2|1.6e+03,TPR_19|PF14559.2|3.4e+03,TPR_19|PF14559.2|1.9e+03,TPR_19|PF14559.2|2.2e+03,TPR_19|PF14559.2|6.3e+02,TPR_19|PF14559.2|35,TPR_19|PF14559.2|1.1e+03,TPR_11|PF13414.2|5.7,TPR_11|PF13414.2|0.25,TPR_11|PF13414.2|0.0085,TPR_11|PF13414.2|2.9e+02,TPR_11|PF13414.2|89,TPR_11|PF13414.2|8.3,TPR_11|PF13414.2|8.9e+02,TPR_11|PF13414.2|20,TPR_1|PF00515.24|4.9e+03,TPR_1|PF00515.24|1e+03,TPR_1|PF00515.24|11,TPR_1|PF00515.24|6.2,TPR_1|PF00515.24|8.1,TPR_1|PF00515.24|27,TPR_1|PF00515.24|9,TPR_1|PF00515.24|34,TPR_1|PF00515.24|84,TPR_1|PF00515.24|9.7e+03,TPR_7|PF13176.2|1.4e+03,TPR_7|PF13176.2|1.9e+02,TPR_7|PF13176.2|58,TPR_7|PF13176.2|88,TPR_7|PF13176.2|0.38,TPR_7|PF13176.2|3.2e+03,TPR_7|PF13176.2|8.6e+02,TPR_7|PF13176.2|1.5e+03,TPR_7|PF13176.2|2.1e+03,TPR_8|PF13181.2|2.5e+02,TPR_8|PF13181.2|2.1e+02,TPR_8|PF13181.2|4.8,TPR_8|PF13181.2|0.47,TPR_8|PF13181.2|1.4e+02,TPR_8|PF13181.2|6.1e+03,TPR_8|PF13181.2|19,TPR_8|PF13181.2|6.5e+03,TPR_8|PF13181.2|2.7e+02,TPR_8|PF13181.2|8.1e+03,TPR_8|PF13181.2|3.9e+02,TPR_8|PF13181.2|19,ANAPC3|PF12895.3|1.5e+03,ANAPC3|PF12895.3|0.18,ANAPC3|PF12895.3|16,ANAPC3|PF12895.3|5.1e+02,ANAPC3|PF12895.3|1.4e+02,ANAPC3|PF12895.3|56,ANAPC3|PF12895.3|3.7e+03 R_Transcript_112224:347-3559(+)
MDSLNSSFLSSIPLSLKPKTLSNKNPPTTIITFTLHCSVSPDPWSLSDGNLHKPKPRSKNPKNPLSDDNARRIIKAKARYLSTLRRNQGPRAQTPKWIRRSPEQMVQYLQDDRNGHLYGKHVVAAIRAVRSLSQKPQGSYDMRKVMASFVAKLSFREMCIVLKEQKGWAQVRDFFAWMKLQLCYRPSVIAYTIVLRAYGQVGKIKLAEETFLEMLDAGCEPDEIACGTMLCTYARWGRHKAMLSFYPAVLDRGVVLSVSVYNFMLSSLQKKSLHQNVVQIYRDMVNRGVLPNQFTFTVAICSLIKEGLVEEGLMAFNRMKSFGFVPEEVTYSLLITSKVKEGKQEEALRLYEEMRSRDILPSNFTCASLLTLYYKSGDYSKALSLFSEMERYKIHADEVIYGLLIRIYGKLGLYDDAEKTFAEAERLGQLSDEKTYLAIAQVHLTMGDFAKALNYMELMRSRNIWFSRFAYTILLKCYVTKGDLGSAELTFQSLFKTGLPDSGSCNDMLKMYIRQGLLEKAKVLIAQIRKESIVFDEELCRTVMKVYSKEGMLEEVEQLMQEIREKGLLEYSSFLRTVALILHAGGANCEREKGTLLAPGLPETNALELMLGLYLATGNGMMIERTLDFLLDTPDGLSAVNQLIGKYVREGDSSKAEILYNLLIKGDPRLDDGILASMITLYGKQQKLERVRELFSAAANPAKYGTEVYNSMIDACAKCGKPEEAYNLYMQCTDKGKDVSPVAISVLVNTLTIHGMHQEVVDVINSSFHGNMMLDTVAYNTFIKAMLEAGKLHFATNIYDRMLSRGVSPSIQTYSTMISVYGRQRKLDKAVEMFNMAQNAGIPLDAKAYTNLISIYGKFGKAQEASDLFVKMREGGVKPGKISYNVMINVYGAAGLYYEAEELFQAMQKDGLRPDSLTYLALMRAYTTSMKYLEAEQVIISMQKEGIHPSCAHFDLLMSVYANAGLIEEAERVFKTILASGLKPDLVCYRTLLRIYLDHGRVDEGISFFERIEESVEPDRFIMSAAVCLYRSTGQHLRAEAITSSMNDLGISFLRGLNIGSKKRITWRQN*

Click here to download the sequence:
Link to NCBI Protein BLAST