Transcript Information: R_Transcript_112678.p1


Annotated TAIR IDAT3G19440.1
Annotated Gene NamePseudouridine synthase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:6740778-6743132 | Forward length=477
E-Value4E-154
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.107484728627
Replicate 20.61632975781697
Replicate 31.8827455558482
Condition 2: 8 Hour
Replicate 12.3000421085475
Replicate 22.8443391774502
Replicate 31.9181741164401
Condition 3: 24 Hour
Replicate 12.605778511168
Replicate 21.294829289075
Replicate 32.3558194868481


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_112678.p1 GENE.R_Transcript_112678~~R_Transcript_112678.p1 ORF type:complete len:511 (+),score=72.56,PseudoU_synth_2|PF00849.18|4.3e-26 R_Transcript_112678:96-1535(+)
ATGAAAGGAGCTTTTCTTCTCCGGCAACTCCTTAAACCTGCGACAACCGCCGACAAAGTCACAAGAACTCAACAATCTTGTTATGCTACTATCACCGCCATAAAGGAAGAGAATAACCAGTCAAAGAAAAACTACTTTAGTAACAACAACAAAGGCAAATGGGTGATTTTACCACCTTATACCTCAACTATCAACCCAGTTTCACTGGGAAAAAGAATAACTGGTCGGAGTACAACAAAAGAGGAAGGTAATAATGAGTCAGTTGAGACTAATACAATCACAGCTCTCAAATGGGTCCTTCGTTGTTGCCCTCAACTCCCTCGTTCACTTGTCCAAAAGCTCTTTCGCCTTCGACAGGTTAGGAGAGAGTGTTCAAAAGTAGTTTTGGGTGGTGGGGCTGAGGCTCAAGAATGTCAGCTCAAAAGGGTGGGATCTAAGCACTTAATGAATGAAGGAGATAGAATATTTCTTCCTATAACTGTAAAAGGCTCATCCATCAAGAAGCAAGAGTATGAGTGCAGTCAAGAAGAAATGAACTTTATTCGTGGTCTCGAGTTGTATAAGGATGAGGCTGTTATTGCCATCAATAAACCGCCGAAATTGCCAGTACAGGGCGGGCATGGAATCCTAAAGAGTTTAGATGAACTGGCTGCTACTTGTCTTAGATACGAATACGAGGATCCTCCTCGTCTGGTCCATAGACTTGACAGGGATAGTAGTGGAATATTGGTGATGGGAAGAACACAAGCAAGCACAGCTGTCCTTCATTCTGTTTTCCGTGAAAAAACTGTCAGTACATTGGACAATAAGGAGATTGACTGGGGGAAGAGAACACTACAGAAGAGATATTTGGCACTTGTTTTTGGAGTTCCTAAAAAGCTGAAGGGATTGATCTCAGCTCCGCTTGCTAAGGTTGTGGTTGATGACGGAAAGTCTGAAAGAATTACAGTTATGGACAATGCTTCGTCTTCGCAGCATGCTGTGACAGAATTCCAAGTCATTGAGACCTCTACTTATGGGTATTCTTGGTTACAGCTCTCGCCGCTTACTGGTAGGAAACACCAGCTTCGTGTACACTGTGCAGAGGTGCTCAGAACACCTATTGTGGGGGACTACAAATATGGGTGGCAAGCTCATCGGAAATGGGAACCTTTGCCACATATGAACTTGAATCCCGATGATAAATTTGAGGAATCAAAATCGAATCACCTTGGCCTCGATTTGAAGTGTGGAAGCATTGCCGAGAAGCAACCCCATTTACATCTACATTGCAAGCAGATGATATTACCCAACATTTCTCAAGCTCTTAAGCATGCATCCCCGAATTCAGATTACGACTTTTCCAAGCTGGAAAGCCTTAACTTGGTTGCTCCCTTGCCGTGGCACATGCAACGGAGTTGCAACCTTCTCAAGGCTCTTGCCATGCAAGCTCCACTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_112678.p1 GENE.R_Transcript_112678~~R_Transcript_112678.p1 ORF type:complete len:511 (+),score=72.56,PseudoU_synth_2|PF00849.18|4.3e-26 R_Transcript_112678:96-1535(+)
MKGAFLLRQLLKPATTADKVTRTQQSCYATITAIKEENNQSKKNYFSNNNKGKWVILPPYTSTINPVSLGKRITGRSTTKEEGNNESVETNTITALKWVLRCCPQLPRSLVQKLFRLRQVRRECSKVVLGGGAEAQECQLKRVGSKHLMNEGDRIFLPITVKGSSIKKQEYECSQEEMNFIRGLELYKDEAVIAINKPPKLPVQGGHGILKSLDELAATCLRYEYEDPPRLVHRLDRDSSGILVMGRTQASTAVLHSVFREKTVSTLDNKEIDWGKRTLQKRYLALVFGVPKKLKGLISAPLAKVVVDDGKSERITVMDNASSSQHAVTEFQVIETSTYGYSWLQLSPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQAHRKWEPLPHMNLNPDDKFEESKSNHLGLDLKCGSIAEKQPHLHLHCKQMILPNISQALKHASPNSDYDFSKLESLNLVAPLPWHMQRSCNLLKALAMQAPL*

Click here to download the sequence:
Link to NCBI Protein BLAST