Transcript Information: R_Transcript_112934.p1


Annotated TAIR IDAT5G65490.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26178003-26180309 | Reverse length=643
E-Value1E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8590978750176
Replicate 20.97205094519899
Replicate 31.6967953774928
Condition 2: 8 Hour
Replicate 12.2672097173375
Replicate 24.140904044664
Replicate 34.3698321863895
Condition 3: 24 Hour
Replicate 14.2514457829082
Replicate 21.4295075206856
Replicate 31.6213114582887


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_112934.p1 GENE.R_Transcript_112934~~R_Transcript_112934.p1 ORF type:3prime_partial len:108 (+),score=3.16,SGT1|PF07093.7|3.7e-27 R_Transcript_112934:106-426(+)
ATGGCGGAAAATTACCAAGCAGACCTAGACGATCCATTCTCCGGCAACCACTCCAGACTCCCAGACGATTCCGTTTTCTACTCCATCTACCCCGAATTTTCTCTCTCCACCGCCACAACAACCACCGAACAACAGCTCCAGTCTCTCCACCTCGAAATTCTGAAAACTCTCTCTCCTCTAACCTCCGACTACATATGGCAACACGAACCCTTCTCTCTCTCCCTCTCTTCTTCCGACCAAATCCCTCACCTTCACGGAAAGGTCAAGTTCGGCGACAACCTCGACGACGAATGGTTTGTCGTTTTCCTCCTCTTTCACCTC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_112934.p1 GENE.R_Transcript_112934~~R_Transcript_112934.p1 ORF type:3prime_partial len:108 (+),score=3.16,SGT1|PF07093.7|3.7e-27 R_Transcript_112934:106-426(+)
MAENYQADLDDPFSGNHSRLPDDSVFYSIYPEFSLSTATTTTEQQLQSLHLEILKTLSPLTSDYIWQHEPFSLSLSSSDQIPHLHGKVKFGDNLDDEWFVVFLLFHL

Click here to download the sequence:
Link to NCBI Protein BLAST