Transcript Information: R_Transcript_113272.p1


Annotated TAIR IDAT5G21140.1
Annotated Gene Nameembryo defective 1379
Annotated Gene Symbol(s)emb1379
Annotation TypeOrtholog
Chromosome Positionchr5:7187416-7189521 | Reverse length=312
E-Value1.5E-122
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.4513669720213
Replicate 24.2524152741869
Replicate 33.9869321765455
Condition 2: 8 Hour
Replicate 14.2617802914509
Replicate 25.5194581759889
Replicate 35.8016223818325
Condition 3: 24 Hour
Replicate 16.538615982574
Replicate 25.3742244765014
Replicate 36.8572239367178


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_113272.p1 GENE.R_Transcript_113272~~R_Transcript_113272.p1 ORF type:complete len:316 (+),score=57.18,SMC_Nse1|PF07574.9|4.3e-44,SMC_Nse1|PF07574.9|2.2e+03,zf-RING-like|PF08746.7|1.1e-07 R_Transcript_113272:230-1177(+)
ATGCCAGAATTAAACTGGAAGCATCACACTTTAATTCAGTCGCTGCTCTCTCGCGGCCCTCTCAAAGCCGAAGAATTTCACAAAGTTTTCGAAGGCGTCACTGGAAGAAACCCAGGTGCTTATGAGCAGTTATTTAACGATTATCTGTTGAAAATAAACAAAGAGCTCTCACTTCTTCAATTAGAGTTAAGGGCGTGTAGAAACCAGTATGATGGTAAAGTCTATTATGGTCTCATTAATAATGTTGCTGATGATCATTCCAAGCTTGGCACCAAATATTCTATTGCTCAGATTGCCTTCTACAAAGGAATTATAGAAGCAATTGTACAAGATGCTGCAGGTCATGGTTGCATCAGCAACTTTACTGCCCTCCATATAAAGCTGGATAATCAGGCTCTTAGTAGTTCACAAGGACAGCCAGGGTCACAATCACAATCAGAAGATGTGCCTGCTGCACTAAAGTATTTCTCAATGTCTCAGAAGGAAAAGACCCTCGAGGAGCTTGTCCGTGATGGATGGCTCTATTCAAGCGAAGATGCTAACATTGGACTTGGTATTAGATCATTTCTTGATCTTCGGAGTTGGTTCCGCCATAATGATATTCCTGCATGTGAGGTTTGCAACGAGGCTGGAGTGAAGGCAGAGCTGTGCCCCTATGAAGGTTGTGCAGTCCGAATTCACAAGTACTGTCTAATTAAGAAATATTCCCAACCAAAGGCTGAAAAAATATGTCCTGTTTGTCGCAAACCATGGCCATATGTTGTTACTAAAGCTGAAGCTGTGGAGCTTGAGGATGATATATCTACACCAACAGAGAGACAACCTTCTAATGAGCCATCCCAGAGAAAAAGGAGAAGGAACTCCCAGCACCTGTCCCAAGATTCTGATAATCCGAGATCAGGGTCCACTCAGGAAAGTGGATTGAGGAGATCTGCTCGTCTTAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_113272.p1 GENE.R_Transcript_113272~~R_Transcript_113272.p1 ORF type:complete len:316 (+),score=57.18,SMC_Nse1|PF07574.9|4.3e-44,SMC_Nse1|PF07574.9|2.2e+03,zf-RING-like|PF08746.7|1.1e-07 R_Transcript_113272:230-1177(+)
MPELNWKHHTLIQSLLSRGPLKAEEFHKVFEGVTGRNPGAYEQLFNDYLLKINKELSLLQLELRACRNQYDGKVYYGLINNVADDHSKLGTKYSIAQIAFYKGIIEAIVQDAAGHGCISNFTALHIKLDNQALSSSQGQPGSQSQSEDVPAALKYFSMSQKEKTLEELVRDGWLYSSEDANIGLGIRSFLDLRSWFRHNDIPACEVCNEAGVKAELCPYEGCAVRIHKYCLIKKYSQPKAEKICPVCRKPWPYVVTKAEAVELEDDISTPTERQPSNEPSQRKRRRNSQHLSQDSDNPRSGSTQESGLRRSARLR*

Click here to download the sequence:
Link to NCBI Protein BLAST