Transcript Information: R_Transcript_113359.p1


Annotated TAIR IDAT5G55310.1
Annotated Gene NameDNA topoisomerase 1 beta
Annotated Gene Symbol(s)TOP1BETA, TOP1
Annotation TypeHomolog
Chromosome Positionchr5:22430389-22434590 | Reverse length=917
E-Value3E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6358785761304
Replicate 21.485587293606
Replicate 30
Condition 2: 8 Hour
Replicate 10.92399490366963
Replicate 20.52737928870721
Replicate 31.0274496577578
Condition 3: 24 Hour
Replicate 10.54145771763453
Replicate 20
Replicate 31.1356827903579


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_113359.p1 GENE.R_Transcript_113359~~R_Transcript_113359.p1 ORF type:5prime_partial len:212 (+),score=16.44,Topoisom_I|PF01028.16|2.2e-24,Topoisom_I_N|PF02919.11|3.2e-07,Topoisom_I_N|PF02919.11|1.3e+03,Topoisom_I_N|PF02919.11|3.4e+02 R_Transcript_113359:1-636(+)
TATTCTCTTGCTCATTCAATTCTTCTCTCATACTTACCCCAAAACACTTTCAAATTCCGCAAAAAATTTATAAACACGATTCACCCCCCTCTCGTGTACTCTAACAGCCTCCTTTTTTTTGGAACTTTAATTTGGGACATGAATTCAAGACATTTAATCATTCTTTGCAGCTGGAAAGAAGTCAGGCATGACAACACTGTTACATGGTTGGCTTATTGGAATGATCCGATAAACTCTAAAAAGTGCAAGCATGTATTCTTGACACCCAGTAGTACACCAAAAGAGCAAAGTGACAAGGAAAAGTATGAGAAAGCAAGGAAGTTGAAGGATCATATTCAAGGTATTAGAGCAACATACACGAAGGATTTTACAAGTAAAGACGAGACCAAACAACATGTAGCTGTTGCGGCTTATCTCATTGATAGACTTGCACTCAGGGCCGGTAATGAGAAGAGAAATAGTTGGCAATTTACTCAATTAGACTTATGTTGGCTGCTGTACATTGAAAGTGGAGAATGTAGAACCAATACCACCAAACATATTAAAGATTCAATCAAGTACGAAAAGCAATTTGAAGCCGAGCCTCTTGTGTACAAAGCTATTGAGCAATTCAGACATGAAAGGAGTGGGCGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_113359.p1 GENE.R_Transcript_113359~~R_Transcript_113359.p1 ORF type:5prime_partial len:212 (+),score=16.44,Topoisom_I|PF01028.16|2.2e-24,Topoisom_I_N|PF02919.11|3.2e-07,Topoisom_I_N|PF02919.11|1.3e+03,Topoisom_I_N|PF02919.11|3.4e+02 R_Transcript_113359:1-636(+)
YSLAHSILLSYLPQNTFKFRKKFINTIHPPLVYSNSLLFFGTLIWDMNSRHLIILCSWKEVRHDNTVTWLAYWNDPINSKKCKHVFLTPSSTPKEQSDKEKYEKARKLKDHIQGIRATYTKDFTSKDETKQHVAVAAYLIDRLALRAGNEKRNSWQFTQLDLCWLLYIESGECRTNTTKHIKDSIKYEKQFEAEPLVYKAIEQFRHERSGR*

Click here to download the sequence:
Link to NCBI Protein BLAST