Transcript Information: R_Transcript_113460.p1


Annotated TAIR IDAT5G48930.1
Annotated Gene Namehydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase
Annotated Gene Symbol(s)HCT
Annotation TypeHomolog
Chromosome Positionchr5:19836654-19838092 | Reverse length=433
E-Value1E-90
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.380100235544
Replicate 210.420673084842
Replicate 313.312956352007
Condition 2: 8 Hour
Replicate 18.9450207740859
Replicate 29.9840099733707
Replicate 312.726221468168
Condition 3: 24 Hour
Replicate 110.758824789367
Replicate 29.1964732643367
Replicate 312.316881788752


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_113460.p1 GENE.R_Transcript_113460~~R_Transcript_113460.p1 ORF type:5prime_partial len:542 (+),score=79.26,Transferase|PF02458.11|2.7e-93 R_Transcript_113460:1-1626(+)
GGGACAGAACACAGCATTTCAAATGGGGATTGTGTAGATATTTTAGTGAGGCTAAAAATTCTGGCAAAGGGGACAGAACACAGCATTTCAAATGGGGATTGTGTAGATATTTTAGTGAGGCTAAAAATTCTGGCAAAGGGGACAGAACACAGCATTTCAAAACAGAGAGAAAGGGAAGAGAAAGAGAGAAAAAGAAAACCCCAAACAGCAGGATTTTCTCCGATTCTGATCGACGACCAAACGAACTCTGATCGTCGCCAAATTTTGAAGATGAGCATCAAAGAGAAGCAAAGGAGCATGGTGCCTCCAGCTGAGGAAACCCCTGGTGGAACATTATGGCTATCAAACCATGACATTTACAGTAGCATTCCGAGAAAACACACAATTTTAGCCATCTTTTATCGTCACCCTCCAAATAAGAGTGACAATTTTTTCGATGCTGAGATTTTGAAGGAGTCTCTGAGCAGAGTTTTGGTGGCATTTTATCCTCTAGCAGGTAGATTACACCAAAACTCAAAGAGTGGTCGTCTCGAGATCGATTGCAATGGAGAAGGAGCGTTGTTTATCGAGGTCGAGACCACGAAAAATATTACACTTGCTGATCTTGAAGAGTCTAATTTTAGACCAACTGATGAGCTGAGGGATTTGGTGTTTCCTAAACGTGATTATTCGGGAGATTTATCTTCTTTCCCTTTGTTGTTTGTGCAACTCACTAGGTTTAGTTGTGGTGGTGTTGCTCTTGGATTTGCTCACAATCACCAAGTTGGAGATGGAGCTGCTTGTTTACACTTCATTACTTCATGGTCTAGATTTGCTAGAGGCCTTGGTCTTGCCTTCAATCCCATCCATGATCGTACCTCCTACATTGTTCCTCGCCATCCTCCTCAAGTTCAGTTTCGTCACTTGGAGTATGAAGATCCTAACTTTGTGTCGTTACCAGATGATTTGCAAACAGCGAGTATATCAGTGACATCGAGCCAACTTTCCAAAGATCAAATTGAGGCCATAAAACAAGAAGCCACATCGTGGAAGGAAACAAGTCAATATAAGGTAACAACATATGAGGTGTTAGCCGCTCACATATGGCGCAGCGCATGTAAAGCCCGTGGTCTAGCACCAGATCAAGAGGTCAGATTAGCAATGCCAGTTAATGGACGGTCAAGATTGTCCTTACCAAAGGGGTATTTTGGGAATGCCATTTTTCATGCAACTCTCACAGCAAAAGCTGGTGACGTCATAAATAAGCCTTTAGGATTTACTGCAAGTGAAGTTCACAAGGCATTGCAAAAAACGACTCATGTGGATTACTTAAGATCAGCCGTTGATTGCTTGGCAACGGTGCCTGATATTGGTGCTATAGCTCGTGGGCCCCGCACCTTTGGGTTTCCTGCCCTTTCGGTGAATACATGGGCCAGATTCCCCTTTGATGAAGTGGATTTTGGATGGGGAGGCCCTGTTTTTGGTGGCAATGGTGGCATTGGATGTGAAGGCCAATGTTTCATCCTACAAAGCCCTAATTCTGATGGTAGCTTGTTGGTCGCTGCTAAACTCTTTGCTCAACACATGACTTTATTTCAAAAGTATCTATATGAGCCCCGCTCTCTTTCTCTATCTCCTTCTCTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_113460.p1 GENE.R_Transcript_113460~~R_Transcript_113460.p1 ORF type:5prime_partial len:542 (+),score=79.26,Transferase|PF02458.11|2.7e-93 R_Transcript_113460:1-1626(+)
GTEHSISNGDCVDILVRLKILAKGTEHSISNGDCVDILVRLKILAKGTEHSISKQREREEKERKRKPQTAGFSPILIDDQTNSDRRQILKMSIKEKQRSMVPPAEETPGGTLWLSNHDIYSSIPRKHTILAIFYRHPPNKSDNFFDAEILKESLSRVLVAFYPLAGRLHQNSKSGRLEIDCNGEGALFIEVETTKNITLADLEESNFRPTDELRDLVFPKRDYSGDLSSFPLLFVQLTRFSCGGVALGFAHNHQVGDGAACLHFITSWSRFARGLGLAFNPIHDRTSYIVPRHPPQVQFRHLEYEDPNFVSLPDDLQTASISVTSSQLSKDQIEAIKQEATSWKETSQYKVTTYEVLAAHIWRSACKARGLAPDQEVRLAMPVNGRSRLSLPKGYFGNAIFHATLTAKAGDVINKPLGFTASEVHKALQKTTHVDYLRSAVDCLATVPDIGAIARGPRTFGFPALSVNTWARFPFDEVDFGWGGPVFGGNGGIGCEGQCFILQSPNSDGSLLVAAKLFAQHMTLFQKYLYEPRSLSLSPSL*

Click here to download the sequence:
Link to NCBI Protein BLAST