Transcript Information: R_Transcript_113829.p1


Annotated TAIR IDAT3G48250.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:17870064-17871929 | Reverse length=621
E-Value8E-181
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9372580846674
Replicate 21.4480207183654
Replicate 31.4810390687168
Condition 2: 8 Hour
Replicate 11.3368719367749
Replicate 21.3172358555871
Replicate 32.2428714272317
Condition 3: 24 Hour
Replicate 12.9027112586752
Replicate 22.1865127348417
Replicate 33.6479507811496


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_113829.p1 GENE.R_Transcript_113829~~R_Transcript_113829.p1 ORF type:complete len:696 (+),score=87.57,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|0.0012,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|2e-10,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|0.0069,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|48,PPR|PF01535.16|78,PPR|PF01535.16|1.5,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.0042,PPR|PF01535.16|6.8e-05,PPR|PF01535.16|0.00021,PPR|PF01535.16|3.2e+02,PPR|PF01535.16|0.011,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|69,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|1.4e-07,PPR_1|PF12854.3|8.6e-06,PPR_1|PF12854.3|5.8e+03,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|2e+03,PPR_3|PF13812.2|5.9e+03,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|0.25,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|8.4e+03,PPR_3|PF13812.2|0.084,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|5e+02,PPR_3|PF13812.2|0.056,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2.6e+02 R_Transcript_113829:114-2090(+)
ATGAACAGAGCTCGGTTAATTAGCCTCTCAGCAAGACTTGCCAACTCGGTGACCTCAACTCAGCACCCAGTACCCCACCCGCTCAGCTCAGCTCAGGTGACTCGCTTCTCTAACCTAACTCAGTATCCTGTTTATTTCTCATTCTCAAAAAAACCATACACTTATCATGACAAGTCCCCATTTACCCTCCAATACTTGTTCTTCTCTTCAAAGCCTGAAACTTTCATTGATAATATATTATCCAATGATTGGTCAGAAGAAATTGAAAATGAATTGGAAAAATCTAACCCAAAACTGACCCATGAATCTATAGTCCATATTTTGATGAAATCCAGAAAAGACCCACAAAAGGCTTTAGCTTTCTTCAAATGGGCTTGTAATAAAAAAGGGTTTAAGCCAAGTTCTGTGCTTTATAATATATTGCTTAGAATTTTGGCTGGTAAAGATTTTATGGATCAGTTTTGGGGTGTTGCCTGGGAAATGAAGGGAAAAGGGATTTGTGTTGATAAACAGTCATACTTAACAATTCATGGGATTCTAAAGCAAGAAAAATTGGTCAACGAAAAGGTGACTTGGACTAATTTTTATAATAAGATGTGTCGAGATTATGCTAGGAATAATAATGTTGCCGAAAATGTGGTTGATGTTATCTTGGGGTCTTATTGGACTGAAAAAGTGGAGGGTAAGTTGAAAGAGATTATTAAGTTTCCGTTGTCGGAGAACTTTTTGTTGATTGTGTTCTCCAACCTCTGGCCGCAACCATCGAGGGCGTTGAAGTTTTTCGATTGGCTTGGCCATTGTCAAGGATATGAACACAATGCTGTTACGTATAATGAGATGGCCAAGGTCTTAGGACAACGTGAATCGATGGAGATGTTTTGGGACTTAGTCAAGCGGATGAGAAGCGAGGGGTATGAGATGGATACTAATACATATGTGAAGATCTCAAGGAATCTTCGTAATGGAGATGCTGTGGACTTATTTGAATTTATGATGGATGGACCCTATAAGCCATCAGAACATGATTGTACCATGCTTTTAAAGAACCTTTCGTTTGATATGAATCCGGATATGGATTTGGTATTTAGGGTGATTAAAAGGTACAAGGCAGCAGGATATACCCTAACGAAGGCTATTTATGATTCCATACATCGATCTGTGTGTAAAGTTGGGAGATTTGATGAGGCCAAGAAGCTTGTGGAGGACATGAAAAACGCTGGGCACAAACCTGACAACATTACTTATAGTCAGGAGATACATGGCCTGTGTAAGCTAAAGAGGTTTGAAGAAGCATGGAAAGTGCTAGAACAAATGGAATCTGAGGGATGTGTTCCAGATGTCAAAACTTGGACGATTTTAATCCAAGGTTATCACGCAGCTGGTTTACTAGATGAGGCCTTGTTATGCTGTGAGAAGATGACACGGAAGAAGATTGATCCAGATGCTGATGTATTGGAAGTCTTCATAAATGGTTTTCTGTCTCAAAATAAATTGCTTGGTGCTTACACAACCCTTATTGAGATGGTAAACAAGGCTCATCTGAGACCATGGCAGGCTACATACAAACTTATGATCGAGAAACTACTGGAGGTGGGGAAACTCGAAGAAGCGCTTAACCTTCTGAGTATGATGAAGCAGCATAATTATCCGCCTTATCCTGACCGATTTGTTCAATATTTCGCCAAATCTGGCTCTGTGGAAGATGCCACGAAGTTCATAAAAGCATTACCTGTAAAGGGTAATCCGTCTACTAAAGCTTATGTTCGTGTTTTGAAATCATTTTTAAATGAAGGTAGACATTCCGAGGCTGAGGATCTGCTTTACAAGAGCCCTCATCGAGTTCGCACCAGCAAGAGAATTACCAGTCTCTTTGGTTCAGTTCAGACCAAGAGTCAGACTCCTATGTCTTTCGTGAAGGATGAAAGCCCAGATATGACTCCTATGTCTTTCGTGAAGGATGAAGGCCCAGGTATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_113829.p1 GENE.R_Transcript_113829~~R_Transcript_113829.p1 ORF type:complete len:696 (+),score=87.57,PPR_2|PF13041.2|0.029,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|0.0012,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|2e-10,PPR_2|PF13041.2|1.5e-11,PPR_2|PF13041.2|1.7e-06,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|0.0069,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|48,PPR|PF01535.16|78,PPR|PF01535.16|1.5,PPR|PF01535.16|2.5e+03,PPR|PF01535.16|0.0042,PPR|PF01535.16|6.8e-05,PPR|PF01535.16|0.00021,PPR|PF01535.16|3.2e+02,PPR|PF01535.16|0.011,PPR|PF01535.16|4.4e+02,PPR|PF01535.16|69,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.3e+02,PPR_1|PF12854.3|1.7e+03,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|1.4e-07,PPR_1|PF12854.3|8.6e-06,PPR_1|PF12854.3|5.8e+03,PPR_1|PF12854.3|15,PPR_1|PF12854.3|1.5e+03,PPR_1|PF12854.3|2e+03,PPR_3|PF13812.2|5.9e+03,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|0.25,PPR_3|PF13812.2|1.1e+04,PPR_3|PF13812.2|8.4e+03,PPR_3|PF13812.2|0.084,PPR_3|PF13812.2|0.0015,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|5e+02,PPR_3|PF13812.2|0.056,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|2.6e+02 R_Transcript_113829:114-2090(+)
MNRARLISLSARLANSVTSTQHPVPHPLSSAQVTRFSNLTQYPVYFSFSKKPYTYHDKSPFTLQYLFFSSKPETFIDNILSNDWSEEIENELEKSNPKLTHESIVHILMKSRKDPQKALAFFKWACNKKGFKPSSVLYNILLRILAGKDFMDQFWGVAWEMKGKGICVDKQSYLTIHGILKQEKLVNEKVTWTNFYNKMCRDYARNNNVAENVVDVILGSYWTEKVEGKLKEIIKFPLSENFLLIVFSNLWPQPSRALKFFDWLGHCQGYEHNAVTYNEMAKVLGQRESMEMFWDLVKRMRSEGYEMDTNTYVKISRNLRNGDAVDLFEFMMDGPYKPSEHDCTMLLKNLSFDMNPDMDLVFRVIKRYKAAGYTLTKAIYDSIHRSVCKVGRFDEAKKLVEDMKNAGHKPDNITYSQEIHGLCKLKRFEEAWKVLEQMESEGCVPDVKTWTILIQGYHAAGLLDEALLCCEKMTRKKIDPDADVLEVFINGFLSQNKLLGAYTTLIEMVNKAHLRPWQATYKLMIEKLLEVGKLEEALNLLSMMKQHNYPPYPDRFVQYFAKSGSVEDATKFIKALPVKGNPSTKAYVRVLKSFLNEGRHSEAEDLLYKSPHRVRTSKRITSLFGSVQTKSQTPMSFVKDESPDMTPMSFVKDEGPGI*

Click here to download the sequence:
Link to NCBI Protein BLAST