Transcript Information: R_Transcript_113944.p1


Annotated TAIR IDAT1G34070.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:12402283-12403209 | Forward length=308
E-Value2E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2433897108119
Replicate 20.40047439486127
Replicate 30.81141032356943
Condition 2: 8 Hour
Replicate 10.66718978057889
Replicate 20.4265018334831
Replicate 30.98918858966686
Condition 3: 24 Hour
Replicate 12.189436656593
Replicate 20.66105680598461
Replicate 31.2524299684601


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_113944.p1 GENE.R_Transcript_113944~~R_Transcript_113944.p1 ORF type:complete len:367 (+),score=38.31,UBN2|PF14223.2|6.4e-17,UBN2_2|PF14227.2|3e-14,UBN2_3|PF14244.2|2.6e-10 R_Transcript_113944:910-2010(+)
ATGAAGACAACGCTGCACTCTGTTGAAGATTTCCTCTCATGGCGAACCCAATTTTTAGCGTTCTTAATCTCTCAAGGCCTTGCTGGTAATGTTGATGGTACTATCCCTCCTCCTATTGAATCTTTTGTGGACTCATATGGCGTCATAAGGTACAATCCCGAATATTCCGCTTGGCTTCGTTTGGATCAAAGTGTTCGTTGTTGGCTTTATGCAACTTTGTCAAAAGAATTGTTAGTAGAGTTTCATGATATTCAGCATTCCCATGATATATGGACTAAATTGCATACACGCTTCAATAATGACAGTTTAGCTCGTTCCATAGAATTAAAACGATCACTTACTATGCTTAAGAAATCTGACCAACAAACTATGGAAGCTTATTTGCGAGATGTTAAACGTATTGCCGATGCTTTAACGTCTATTCGTAATCCTGTCTCCAATGAAGATTTAGCTCAATATACACTTATGGGGTTGCCTGCTGAATATGAAACTCTAGTCACTATGTTGTTGCATCAGTCTGGTACTTTGGTTTTTGATGAGCTTCGAGCCAAGTTAATTTGGCATGAGCAAAGATTGCGTCTGTTGCGTGCCCCTGATGCGTCTATAATGCACCAAGCACTTGCTACTACTACTAATACCACACGGCCAGGATCATCAGGGGAATCTTACAACCAATCCTCTCGATCTAATGGGGGTGGACGTGGAGGTTCATCGAACAATAACCGTCGTTGGCGCAACAATAACTACCGCAACAATCGTGGTCGTGGTCGTGGCAGTCGTGGTCAGCAAGGAGGGCGAAATTACACCAACAACAACAATTCTGCGCCTTCTAGCAACAATCATACTGGTTTGCTTTTATGTTCTGCAAATGTCAATTCTGGTTTAGAATTAGCTAGCACTGGCACTTCCAAATTGTGTACTAATAATTTGTTGACTGCTGGCACCACTACTCAGGAAGGAGTGTTAGGTTCTCCCCCATTTCATTGGTTTGTTGTGTTTGCTATTATCCAGGTCATCGTGCATCTCAGTGTCCCTTCTGTACCACATCTGGCACTGCTTCTACTACTCTTCCTGTGTCTGCTCAATCTTTTGCATCCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_113944.p1 GENE.R_Transcript_113944~~R_Transcript_113944.p1 ORF type:complete len:367 (+),score=38.31,UBN2|PF14223.2|6.4e-17,UBN2_2|PF14227.2|3e-14,UBN2_3|PF14244.2|2.6e-10 R_Transcript_113944:910-2010(+)
MKTTLHSVEDFLSWRTQFLAFLISQGLAGNVDGTIPPPIESFVDSYGVIRYNPEYSAWLRLDQSVRCWLYATLSKELLVEFHDIQHSHDIWTKLHTRFNNDSLARSIELKRSLTMLKKSDQQTMEAYLRDVKRIADALTSIRNPVSNEDLAQYTLMGLPAEYETLVTMLLHQSGTLVFDELRAKLIWHEQRLRLLRAPDASIMHQALATTTNTTRPGSSGESYNQSSRSNGGGRGGSSNNNRRWRNNNYRNNRGRGRGSRGQQGGRNYTNNNNSAPSSNNHTGLLLCSANVNSGLELASTGTSKLCTNNLLTAGTTTQEGVLGSPPFHWFVVFAIIQVIVHLSVPSVPHLALLLLLFLCLLNLLHP*

Click here to download the sequence:
Link to NCBI Protein BLAST