Transcript Information: R_Transcript_114116.p1


Annotated TAIR IDAT2G30105.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:12849855-12851908 | Forward length=367
E-Value1E-48
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0581426640417
Replicate 20.81145122381828
Replicate 30
Condition 2: 8 Hour
Replicate 11.3011812290807
Replicate 20.43209433509537
Replicate 31.2276451627315
Condition 3: 24 Hour
Replicate 11.3308873755191
Replicate 20.95892429959032
Replicate 30.42295081520575


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_114116.p1 GENE.R_Transcript_114116~~R_Transcript_114116.p1 ORF type:complete len:207 (+),score=31.92,LRR_8|PF13855.2|1.7e-05,LRR_8|PF13855.2|4.3e-06,LRR_8|PF13855.2|0.075,LRR_4|PF12799.3|0.02,LRR_4|PF12799.3|9.1e-05,LRR_4|PF12799.3|6.1e-05,LRR_4|PF12799.3|0.00097 R_Transcript_114116:207-827(+)
ATGTCCTTCCTCGTGGCCAAAAGCTTATTCACAAAGGGCCTTCACCAAGGCGAGGGTCCCAAGCTCAAGGATGCTCCTGTTGTTTCCAATTATCGGAGAATTATGAATGTAGACAGAAAGCCTAACCAACCCATCCAACAAGTACCACTGCTGGTTAAGACCAGAACTGAGCGTTGGAAGACCACTGGGGTTGTTGCCCTCTCCCAATCCCATTTGCAAGCTATACCTGATGAAGTATGGGATTGTGGGTCTTCTGCTAGAGTTCTTGATCTCAGCAACAACCTTATATGTGATGTACCCATCAAAATTGGCTGCCTGACATCAATCCAGAAATTAATCTTGAACTCAAATAAAATCTCTGATGATTCAATCAGTTGGCAAGGTCTGACTGAGTTGAAGAGTCTAACATATCTTTCTTTGAACCAAAACCATTTGACATATTTGCCGCCATCCTTGGCTTCACTCACTTTGCTGGAGCAGCTGCATGTTGCAGGCAATAAATTAGGAAGTCTTCCAATAGAGATGGGCTCTCTGACTCACCTGGAGATTTTAAAAGTTAACAATAACAGGAAGATAAATGATATTAGAACTAGAAGACATGTGAAAGCGAACTCATCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_114116.p1 GENE.R_Transcript_114116~~R_Transcript_114116.p1 ORF type:complete len:207 (+),score=31.92,LRR_8|PF13855.2|1.7e-05,LRR_8|PF13855.2|4.3e-06,LRR_8|PF13855.2|0.075,LRR_4|PF12799.3|0.02,LRR_4|PF12799.3|9.1e-05,LRR_4|PF12799.3|6.1e-05,LRR_4|PF12799.3|0.00097 R_Transcript_114116:207-827(+)
MSFLVAKSLFTKGLHQGEGPKLKDAPVVSNYRRIMNVDRKPNQPIQQVPLLVKTRTERWKTTGVVALSQSHLQAIPDEVWDCGSSARVLDLSNNLICDVPIKIGCLTSIQKLILNSNKISDDSISWQGLTELKSLTYLSLNQNHLTYLPPSLASLTLLEQLHVAGNKLGSLPIEMGSLTHLEILKVNNNRKINDIRTRRHVKANSS*

Click here to download the sequence:
Link to NCBI Protein BLAST