Transcript Information: R_Transcript_114118.p2


Annotated TAIR IDAT2G30105.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:12849855-12851908 | Forward length=367
E-Value5E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.97783719400279
Replicate 20.49991191467376
Replicate 30
Condition 2: 8 Hour
Replicate 11.4574919611455
Replicate 21.597205845799
Replicate 30.97240771180645
Condition 3: 24 Hour
Replicate 10
Replicate 21.312813029201
Replicate 32.3451112164533


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_114118.p2 GENE.R_Transcript_114118~~R_Transcript_114118.p2 ORF type:complete len:168 (+),score=24.25,ubiquitin|PF00240.19|3.3e-16 R_Transcript_114118:749-1252(+)
ATGGAAGAGGAAAAGGTGAAGGTACAGATCAAATTCGGAGGGGAGACAATATCTGTGAGTGTCTCCCCGGATTCAACCATCTCTGACCTCAAATCCCATCTCCAACCCCTCACCAATGTCCTTCCTCGTGGCCAAAAGCTTATTCACAAAGGCAAGTTTCTTGTGGATTCTAACACCTTGAGATCATCTCACATCATTAATGGCTCCAAAATCATGCTCATGGCTTCTCAGGGCCTTCACCAAGGCGAGGGTCCCAAGCTCAAGGATGCTCCTGTTGTTTCCAATTATCGGAGAATTATGAATGTAGACAGAAAGCCTAACCAACCCATCCAACAAGTACCACTGCTGGTTAAGACCAGAACTGAGCGTTGGAAGACCACTGGGGTTGTTGCCCTCTCCCACTCCCATTTGCAAGTAAACCCCCTTCCCCCCCTTCAACTTTTAACTTCTTTATTACTCCCTTACTCCAACACCCTTAAACTTTTAAGTGTTTCTCAACCCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_114118.p2 GENE.R_Transcript_114118~~R_Transcript_114118.p2 ORF type:complete len:168 (+),score=24.25,ubiquitin|PF00240.19|3.3e-16 R_Transcript_114118:749-1252(+)
MEEEKVKVQIKFGGETISVSVSPDSTISDLKSHLQPLTNVLPRGQKLIHKGKFLVDSNTLRSSHIINGSKIMLMASQGLHQGEGPKLKDAPVVSNYRRIMNVDRKPNQPIQQVPLLVKTRTERWKTTGVVALSHSHLQVNPLPPLQLLTSLLLPYSNTLKLLSVSQP*

Click here to download the sequence:
Link to NCBI Protein BLAST