Transcript Information: R_Transcript_114122.p2


Annotated TAIR IDAT2G30105.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:12849855-12851908 | Forward length=367
E-Value4E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5765937005868
Replicate 22.8373378940943
Replicate 34.6432576208417
Condition 2: 8 Hour
Replicate 13.474345701974
Replicate 28.0076130917759
Replicate 36.7455309737925
Condition 3: 24 Hour
Replicate 15.2740908496077
Replicate 25.5138147226443
Replicate 36.9508251370552


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_114122.p2 GENE.R_Transcript_114122~~R_Transcript_114122.p2 ORF type:complete len:148 (+),score=26.16,ubiquitin|PF00240.19|2.4e-16 R_Transcript_114122:749-1192(+)
ATGGAAGAGGAAAAGGTGAAGGTACAGATCAAATTCGGAGGGGAGACAATATCTGTGAGTGTCTCCCCGGATTCAACCATCTCTGACCTCAAATCCCATCTCCAACCCCTCACCAATGTCCTTCCTCGTGGCCAAAAGCTTATTCACAAAGGCAAGTTTCTTGTGGATTCTAACACCTTGAGATCATCTCACATCATTAATGGCTCCAAAATCATGCTCATGGCTTCTCAGGGCCTTCACCAAGGCGAGGGTCCCAAGCTCAAGGATGCTCCTGTTGTTTCCAATTATCGGAGAATTATGAATGTAGACAGAAAGCCTAACCAACCCATCCAACAAGTACCACTGCTGGTTAAGACCAGAACTGAGCGTTGGAAGACCACTGGGGTTGTTGCCCTCTCCCACTCCCATTTGCAAGTGAGGGGCCAGTGGAGGATAGACATCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_114122.p2 GENE.R_Transcript_114122~~R_Transcript_114122.p2 ORF type:complete len:148 (+),score=26.16,ubiquitin|PF00240.19|2.4e-16 R_Transcript_114122:749-1192(+)
MEEEKVKVQIKFGGETISVSVSPDSTISDLKSHLQPLTNVLPRGQKLIHKGKFLVDSNTLRSSHIINGSKIMLMASQGLHQGEGPKLKDAPVVSNYRRIMNVDRKPNQPIQQVPLLVKTRTERWKTTGVVALSHSHLQVRGQWRIDI*

Click here to download the sequence:
Link to NCBI Protein BLAST