Transcript Information: R_Transcript_114123.p1


Annotated TAIR IDAT2G30105.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:12849855-12851908 | Forward length=367
E-Value2.3E-119
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.268383592516
Replicate 28.5362008249868
Replicate 38.8622788076918
Condition 2: 8 Hour
Replicate 18.6704046370573
Replicate 211.143783737247
Replicate 39.2841024812471
Condition 3: 24 Hour
Replicate 19.5594803866178
Replicate 28.1712926381483
Replicate 311.338548657475


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_114123.p1 GENE.R_Transcript_114123~~R_Transcript_114123.p1 ORF type:complete len:305 (+),score=54.51,LRR_8|PF13855.2|3.4e-05,LRR_8|PF13855.2|8.2e-06,LRR_8|PF13855.2|0.00024,LRR_8|PF13855.2|7.5e-08,LRR_4|PF12799.3|0.023,LRR_4|PF12799.3|0.00039,LRR_4|PF12799.3|0.00016,LRR_4|PF12799.3|0.0017,LRR_4|PF12799.3|0.00049,LRR_1|PF00560.29|20,LRR_1|PF00560.29|12,LRR_1|PF00560.29|9.1e+02,LRR_1|PF00560.29|20,LRR_1|PF00560.29|2.1e+02,LRR_1|PF00560.29|0.058,LRR_1|PF00560.29|4.2e+03 R_Transcript_114123:207-1121(+)
ATGTCCTTCCTCGTGGCCAAAAGCTTATTCACAAAGGGCCTTCACCAAGGCGAGGGTCCCAAGCTCAAGGATGCTCCTGTTGTTTCCAATTATCGGAGAATTATGAATGTAGACAGAAAGCCTAACCAACCCATCCAACAAGTACCACTGCTGGTTAAGACCAGAACTGAGCGTTGGAAGACCACTGGGGTTGTTGCCCTCTCCCAATCCCATTTGCAAGCTATACCTGATGAAGTATGGGATTGTGGGTCTTCTGCTAGAGTTCTTGATCTCAGCAACAACCTTATATGTGATGTACCCATCAAAATTGGCTGCCTGACATCAATCCAGAAATTAATCTTGAACTCAAATAAAATCTCTGATGATTCAATCAGTTGGCAAGGTCTGACTGAGTTGAAGAGTCTAACATATCTTTCTTTGAACCAAAACCATTTGACATATTTGCCGCCATCCTTGGCTTCACTCACTTTGCTGGAGCAGCTGCATGTTGCAGGCAATAAATTAGGAAGTCTTCCAATAGAGATGGGCTCTCTGACTCACCTGGAGATTTTAAAAGTTAACAATAACAGGATAACCTCCATACCTGCTTGCATAGGTGACTGCAGCTCTTTAATTGAGGTTGATCTTTCTTCGAATCTTCTTGTAGAGTTACCTGAAACATTTGGCAGGCTACAGAATTTGAAGATCTTGCATCTCAGTAACAACGGACTTAAATCACTCCCATCTGCTCTATTCAAAAAGTGTCTCAGGCTCTCAACTCTTGATCTCCATGGAACAGAAATTACAATGGATACCCTCCGTCAGGCCGAGGGATGGGAAGATTTTGATGAGCGGCGACGCTTGAAATATCAGAAGCAACTTGATTTTCGTGCTGGTGGCTCTGCTGAATTTGATGAAGGTGCTGATAAAAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_114123.p1 GENE.R_Transcript_114123~~R_Transcript_114123.p1 ORF type:complete len:305 (+),score=54.51,LRR_8|PF13855.2|3.4e-05,LRR_8|PF13855.2|8.2e-06,LRR_8|PF13855.2|0.00024,LRR_8|PF13855.2|7.5e-08,LRR_4|PF12799.3|0.023,LRR_4|PF12799.3|0.00039,LRR_4|PF12799.3|0.00016,LRR_4|PF12799.3|0.0017,LRR_4|PF12799.3|0.00049,LRR_1|PF00560.29|20,LRR_1|PF00560.29|12,LRR_1|PF00560.29|9.1e+02,LRR_1|PF00560.29|20,LRR_1|PF00560.29|2.1e+02,LRR_1|PF00560.29|0.058,LRR_1|PF00560.29|4.2e+03 R_Transcript_114123:207-1121(+)
MSFLVAKSLFTKGLHQGEGPKLKDAPVVSNYRRIMNVDRKPNQPIQQVPLLVKTRTERWKTTGVVALSQSHLQAIPDEVWDCGSSARVLDLSNNLICDVPIKIGCLTSIQKLILNSNKISDDSISWQGLTELKSLTYLSLNQNHLTYLPPSLASLTLLEQLHVAGNKLGSLPIEMGSLTHLEILKVNNNRITSIPACIGDCSSLIEVDLSSNLLVELPETFGRLQNLKILHLSNNGLKSLPSALFKKCLRLSTLDLHGTEITMDTLRQAEGWEDFDERRRLKYQKQLDFRAGGSAEFDEGADKN*

Click here to download the sequence:
Link to NCBI Protein BLAST