Transcript Information: R_Transcript_1142.p1


Annotated TAIR IDAT3G51880.2
Annotated Gene Namehigh mobility group B1
Annotated Gene Symbol(s)HMGB1, NFD1
Annotation TypeOrtholog
Chromosome Positionchr3:19247241-19248491 | Reverse length=185
E-Value3E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.745694755601
Replicate 213.038025258508
Replicate 310.899173533653
Condition 2: 8 Hour
Replicate 13.1594664448058
Replicate 24.5082423066906
Replicate 39.5149571800416
Condition 3: 24 Hour
Replicate 113.145196073927
Replicate 212.094819391607
Replicate 314.827154787898


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_1142.p1 GENE.R_Transcript_1142~~R_Transcript_1142.p1 ORF type:5prime_partial len:124 (+),score=52.80,HMG_box|PF00505.15|6.7e-23,HMG_box_2|PF09011.6|4.5e-16 R_Transcript_1142:2-373(+)
GACAACAAGTTGTCAGTGAAGAAGAAGGCGGTGAAGAAAGGAAAGGACCCTAACAAGCCTAAGAGGCCTCCTAGCGCCTTCTTCGTCTTCATGGAAGATTTCAGGAAGACTTTCAAGGAGAAGCATCCTAACAACAAATCAGTTGCCGCTGTCGGAAAAGCTGGTGGCGAGAAATGGAAGTCGTTGACCGAAGTTGAGAAAGCTTCTTACATTGAAAAGGCAGATAAGAAGAAGAAAGAGTACGAGAAAAACATGAATGCTTACTACAAGAAACAGGCTGAGGGACCTGGAGATGATGATTCTGACAAGTCCAGATCTGAGGTCAATGATGAGGAAGGCAGTGGAGAGGAGGAAGAAGAGGATGATGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_1142.p1 GENE.R_Transcript_1142~~R_Transcript_1142.p1 ORF type:5prime_partial len:124 (+),score=52.80,HMG_box|PF00505.15|6.7e-23,HMG_box_2|PF09011.6|4.5e-16 R_Transcript_1142:2-373(+)
DNKLSVKKKAVKKGKDPNKPKRPPSAFFVFMEDFRKTFKEKHPNNKSVAAVGKAGGEKWKSLTEVEKASYIEKADKKKKEYEKNMNAYYKKQAEGPGDDDSDKSRSEVNDEEGSGEEEEEDDE*

Click here to download the sequence:
Link to NCBI Protein BLAST