Transcript Information: R_Transcript_114344.p1


Annotated TAIR IDAT3G25690.1
Annotated Gene NameHydroxyproline-rich glycoprotein family protein
Annotated Gene Symbol(s)CHUP1
Annotation TypeHomolog
Chromosome Positionchr3:9354061-9357757 | Forward length=1004
E-Value1E-93
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0952155988151
Replicate 22.5572417173696
Replicate 34.2583037839001
Condition 2: 8 Hour
Replicate 11.4911263910181
Replicate 22.078415299341
Replicate 31.3962777400298
Condition 3: 24 Hour
Replicate 14.7092937902983
Replicate 25.6551945873275
Replicate 34.419632677162


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_114344.p1 GENE.R_Transcript_114344~~R_Transcript_114344.p1 ORF type:5prime_partial len:312 (+),score=64.77 R_Transcript_114344:2-937(+)
TCATGTGACAATTCAACTATTTGTAAGGAAGATCAAGCTTCTATAGCGGCACATCCCCCGCCACCTCCTCCTCCACCACCACCACCATCTCGGTTTTCAGTAGGCAATACTTGTTCTAGTGCTGTGCAGCGTGCACCACAGGTAGTGGAATTCTATCATTCACTAATGAAAAGGGATACGCGAAGAGACTCTACTGGTGGAGCAATCTGTGACAGCCCCAATGTGGCAAGTGTCCGAAGCAATATGATTGGTGAAATTGAGAATCGGTCTTCTTACTTGCTCGCTATAAAGGCAGATGTTGAGACTCAAGGAGAATTTGTGAATTCGTTGATTAGAGAAGTTAAAAAGGCTGTTTACCGAGATATAGAGGATGTTTTGGCATTCGTCAATTGGCTGGATGATGAGCTTTGCTTCCTCGTGGATGAAAGGGCAGTCTTGAAGCACTTTGATTGGCCAGAGAAGAAAGCTGACACATTAAGAGAAGCAGCATTTGGCTACAAAGATTTAAAGAAACTAGAGTCAGAAGTCACTAATTATCATGATGATCCTCGGCTGCCCTGTGATATTGCCTTGAAGAAAATGGTTTCTTTGTCTGAGAAGAACGAGCATACAATTTATAACCTTCTTCGAACAAGAGACTCATTGATTCGTAGCTGTAAGGAATTCAAAATTCCTACAGAATGGATGCTTGACAGTGGAATCATAAGCAAGGTAAAGCTCGGCTCAGTAAAATTGGCAAAGAAATACATGAACAGAGTGGCTACAGAACTCCAATCCCGGACATCTCTCGATAAAGATCCCGCAATGGACTACATGCTCCTTCAAGGAGTGAGGTTTGCCTTCAGAATCCATCAGTTTGCTGGAGGTTTTGATGCTGAAACGATGCAAGCATTCGAAGAACTTCGCAAATTTGCCCATGCTCTGAACGGAAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_114344.p1 GENE.R_Transcript_114344~~R_Transcript_114344.p1 ORF type:5prime_partial len:312 (+),score=64.77 R_Transcript_114344:2-937(+)
SCDNSTICKEDQASIAAHPPPPPPPPPPPSRFSVGNTCSSAVQRAPQVVEFYHSLMKRDTRRDSTGGAICDSPNVASVRSNMIGEIENRSSYLLAIKADVETQGEFVNSLIREVKKAVYRDIEDVLAFVNWLDDELCFLVDERAVLKHFDWPEKKADTLREAAFGYKDLKKLESEVTNYHDDPRLPCDIALKKMVSLSEKNEHTIYNLLRTRDSLIRSCKEFKIPTEWMLDSGIISKVKLGSVKLAKKYMNRVATELQSRTSLDKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMQAFEELRKFAHALNGR*

Click here to download the sequence:
Link to NCBI Protein BLAST