Transcript Information: R_Transcript_114368.p1


Annotated TAIR IDAT4G39952.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:18527680-18530007 | Forward length=775
E-Value4.4E-265
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0233081108904
Replicate 20.54749153627896
Replicate 30.86609568486104
Condition 2: 8 Hour
Replicate 10.79810511562077
Replicate 21.0203792235222
Replicate 31.6092692596953
Condition 3: 24 Hour
Replicate 12.0653046919317
Replicate 21.0639433884633
Replicate 32.2544050459777


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_114368.p1 GENE.R_Transcript_114368~~R_Transcript_114368.p1 ORF type:5prime_partial len:767 (+),score=132.64,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.017,PPR|PF01535.16|0.017,PPR|PF01535.16|0.0015,PPR|PF01535.16|3.5,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|15,PPR|PF01535.16|0.00062,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.041,PPR|PF01535.16|1.9e-08,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|1,PPR|PF01535.16|3e-07,PPR|PF01535.16|0.12,PPR|PF01535.16|2e+02,PPR|PF01535.16|6.7e+02,PPR_2|PF13041.2|2.9e-05,PPR_2|PF13041.2|1.3e+04,PPR_2|PF13041.2|49,PPR_2|PF13041.2|0.003,PPR_2|PF13041.2|4e+02,PPR_2|PF13041.2|1.5e-06,PPR_2|PF13041.2|64,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|3.2e-12,PPR_2|PF13041.2|3.7e+02,PPR_2|PF13041.2|47,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|0.42,PPR_3|PF13812.2|4.5e+02,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|18,PPR_3|PF13812.2|5.9e+02,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|4.2e+03,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.0093,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|1e+02,PPR_3|PF13812.2|0.0061,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|35,PPR_1|PF12854.3|17,PPR_1|PF12854.3|8.7e+03,PPR_1|PF12854.3|42,PPR_1|PF12854.3|24,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|13,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|11,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.00063,PPR_1|PF12854.3|2e+02 R_Transcript_114368:1-2301(+)
AAAACACCAAGGAGGAGTTCCATGTCCAAACTCAACCCAACTCATCTCCTTAAACAATTTTCTCATCTCCAATTCTCCACAACAACTTCCCACATCAACAACTACATAAACTGTCAGTTGGATTCTTTTCTCTCTAAACACTTCTTAGCCTCCCAATCTCTCCTCCCATCTCATGCTTTCATCATAGTCACTGGCAACCACAACAATGTCTTCATTTCATCAAAGCTCATTTCTTTATATGCTTCTCTTTCTAAACCCGACTTGTCCACCAAAGTCTTTTATCAAACCCCTTGTAAAGACCCATTTCTTTGGAATTCTATCATCAAATCCCACTTTTCCAATGGTGGGTACCAAAAAGCCCTTGACTTTTTTCTGGGTATGCGTTTTTCCAATTGCCCACCTAATAATTTCACCATCCCAATGGCTGCCACTGCTTGTGCTGAGCTCGGGGAGGTTGTTTATGGAGAGATCATTCATGGGTTGGTTACGAAATTTGGTCTGTTTGGTGGGAATTCTGCCATTGGATCTTCTTTAATGTATTTGTATTCGAAATGTGGCTGCATGGGTAATGCACTCCATGTGTTCGATGAAATGCCTGTTAGAGATGTGGTCGCTTGGACCGCGCTTGTAGTTGGTTATTTGCAGAATGGTGAGAGTGAGAGAGCGTTGGAGTGTCTTTGTTTGATGCATAGGGTTGGTGAGGATGGCGAAAGGCCGAATGCTAGAACCCTTGAAGGGGGGTTCCAAGCTTGTGGGAATGTAGGGGCTTTGACAGCAGGGAAATGCTTGCAGGGTTTTGCTATAAAGAGTGGGTATGGGGTTTCCCAAGATATTCAAACATCAGTTTTGTCAATGTATTCCAAGTTGGGGTCCCTTGAAGAAGCTCATCATTCATTTTGTGAAGTAGGAGATAAAGATCTTATGTGTTGGACATCAGTCATTTCTGCTTATGCAAGATTGGGGTGTGTTACTGAATGTTTAGTCTTGTTTTCGCAAATGCGGAATTCTGGAATATACCCTGATGAAATTCTTCTTAGCTGTGTGCTTTCATCCTTTAATGATTCGATGTGGGTCCGTGAAGGGAAGGCATTTCATGGTTTATTAGTGCGGAGAAGTTATGTCCAGGACCAAGTGGTTCATAGGGCATTGATAGCTATGTACTGTAGATTAGCAATGGTTGCTGATGGAGAAAGGATCTTTGACAGAATACATGACAAAAAACCAGAGACTTGGAACTTGATGGTCTATGAATATGGAAAAGCAGGACTTGGCAGAAAGTGTATGGTTCTTCTTCGAGAAATGCTGCATCAAGGGATAGGTTGTGATTCCAATAGTCTGATATCTGTAATTTCTTCATGTTCACAATTGGGCACAATCCGTCTTGGTAAATCTTTGCATTGCCATATCATTAAGGGTCTACTTGATGAGAATGTTTCAATTTCCAATTCACTCATAGATATGTATGCAAAATGTGGCAATCTAACCCTTGCAAAAAGGATCTTTGGTAGGACGCAAAGAGATACTGTCACGTGGAACACGATGATCTCTGCCTATGTTTGCAGGGAAGATATGGTGGAGGCAATGTCATTATTTGATGAAATGATATTAGAAGGATGGAAACCAAACTCAGCAACTCTAGTGAGTGTTCTTTCTGCTTGCTCTCAGTCAGCTGCATTAGAGAAAGGAATGAAGATACACAACTATGTCAAGGAAATGGGATTGGAGTTAACAATCTCAGTAGCAACAGCATTAAATGACATGTATGGGAAATGTGGACATGTCGAAAGGTCACGGCAGATTTTTGATTCAATGAATGAAAGGGATGTCGTTGCTTGGAATGTGATGATTTCCTGTTATGGCATGCACGGAGATGCACAATCTGCCATTGAGATCTTCAAACAGATGGAAGAATCTACTGTCAGGCCAAATGGGCTGACCTTTCTAGCTGTTTTGTCAGCTTGTAGCCATGCGGGACTTACTAAAGAAGGCAGATATTATTTTCATAAGATGAAAGATTACTCTGTAACACCCACCTTAAAGCACTATGCCTGCATTGTGGATCTTCTTGGTAAGACTGGAAATTTGCAGGAAACTGAGGATTTGGTTCTTTCGATGCCAATTGCTCCTGATGGGGGTCTTTGGGGAGCTTTGTTGAATGCTTGTAAAATCCACAATGATGTAGAGATGGGGATAAGGATTGCCAATTATGCCATTGAGGCTGATCCAGAAAATGATGGATATTATATCTGTATCAAATATGTTGGATTCCTCAGGAAAGTGGGAGGAAGCAGAAAAGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_114368.p1 GENE.R_Transcript_114368~~R_Transcript_114368.p1 ORF type:5prime_partial len:767 (+),score=132.64,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.017,PPR|PF01535.16|0.017,PPR|PF01535.16|0.0015,PPR|PF01535.16|3.5,PPR|PF01535.16|2.4e-06,PPR|PF01535.16|15,PPR|PF01535.16|0.00062,PPR|PF01535.16|1.7e+03,PPR|PF01535.16|0.041,PPR|PF01535.16|1.9e-08,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|1,PPR|PF01535.16|3e-07,PPR|PF01535.16|0.12,PPR|PF01535.16|2e+02,PPR|PF01535.16|6.7e+02,PPR_2|PF13041.2|2.9e-05,PPR_2|PF13041.2|1.3e+04,PPR_2|PF13041.2|49,PPR_2|PF13041.2|0.003,PPR_2|PF13041.2|4e+02,PPR_2|PF13041.2|1.5e-06,PPR_2|PF13041.2|64,PPR_2|PF13041.2|0.46,PPR_2|PF13041.2|1.4,PPR_2|PF13041.2|3.2e-12,PPR_2|PF13041.2|3.7e+02,PPR_2|PF13041.2|47,PPR_2|PF13041.2|2.3e-10,PPR_2|PF13041.2|0.42,PPR_3|PF13812.2|4.5e+02,PPR_3|PF13812.2|4.3e+02,PPR_3|PF13812.2|18,PPR_3|PF13812.2|5.9e+02,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|4.2e+03,PPR_3|PF13812.2|5.6,PPR_3|PF13812.2|22,PPR_3|PF13812.2|0.0093,PPR_3|PF13812.2|1.4e+03,PPR_3|PF13812.2|1e+02,PPR_3|PF13812.2|0.0061,PPR_3|PF13812.2|3.3,PPR_3|PF13812.2|35,PPR_1|PF12854.3|17,PPR_1|PF12854.3|8.7e+03,PPR_1|PF12854.3|42,PPR_1|PF12854.3|24,PPR_1|PF12854.3|1.4,PPR_1|PF12854.3|13,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|11,PPR_1|PF12854.3|1.9e-05,PPR_1|PF12854.3|1.5e+02,PPR_1|PF12854.3|0.00063,PPR_1|PF12854.3|2e+02 R_Transcript_114368:1-2301(+)
KTPRRSSMSKLNPTHLLKQFSHLQFSTTTSHINNYINCQLDSFLSKHFLASQSLLPSHAFIIVTGNHNNVFISSKLISLYASLSKPDLSTKVFYQTPCKDPFLWNSIIKSHFSNGGYQKALDFFLGMRFSNCPPNNFTIPMAATACAELGEVVYGEIIHGLVTKFGLFGGNSAIGSSLMYLYSKCGCMGNALHVFDEMPVRDVVAWTALVVGYLQNGESERALECLCLMHRVGEDGERPNARTLEGGFQACGNVGALTAGKCLQGFAIKSGYGVSQDIQTSVLSMYSKLGSLEEAHHSFCEVGDKDLMCWTSVISAYARLGCVTECLVLFSQMRNSGIYPDEILLSCVLSSFNDSMWVREGKAFHGLLVRRSYVQDQVVHRALIAMYCRLAMVADGERIFDRIHDKKPETWNLMVYEYGKAGLGRKCMVLLREMLHQGIGCDSNSLISVISSCSQLGTIRLGKSLHCHIIKGLLDENVSISNSLIDMYAKCGNLTLAKRIFGRTQRDTVTWNTMISAYVCREDMVEAMSLFDEMILEGWKPNSATLVSVLSACSQSAALEKGMKIHNYVKEMGLELTISVATALNDMYGKCGHVERSRQIFDSMNERDVVAWNVMISCYGMHGDAQSAIEIFKQMEESTVRPNGLTFLAVLSACSHAGLTKEGRYYFHKMKDYSVTPTLKHYACIVDLLGKTGNLQETEDLVLSMPIAPDGGLWGALLNACKIHNDVEMGIRIANYAIEADPENDGYYICIKYVGFLRKVGGSRKA*

Click here to download the sequence:
Link to NCBI Protein BLAST