Transcript Information: R_Transcript_115368.p1


Annotated TAIR IDAT3G26610.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:9777025-9780267 | Forward length=470
E-Value4.6E-142
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.7132779797555
Replicate 20.79445461034641
Replicate 32.228763658004
Condition 2: 8 Hour
Replicate 10.92649218719306
Replicate 20.060434815786988
Replicate 30.34340884957489
Condition 3: 24 Hour
Replicate 10.74457753170932
Replicate 20.059608807812371
Replicate 31.7155227997838


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_115368.p1 GENE.R_Transcript_115368~~R_Transcript_115368.p1 ORF type:complete len:370 (+),score=42.50,Glyco_hydro_28|PF00295.13|2.4e-57,Pectate_lyase_3|PF12708.3|4.6e-05,Pectate_lyase_3|PF12708.3|9.1,Pectate_lyase_3|PF12708.3|10,Beta_helix|PF13229.2|2.6e-06 R_Transcript_115368:32-1111(+)
ATGAAAAGTGCTTGCAAATTCATAGCCATTCTTTATCTTTTGGTTTTCCTAGCAAGTTTATGTATCACAATTCCAATTGTTTGTGTAGAAGCTAGGAAGAGCAGTGCAACAAGTCATAATAAGCATCACCATAAGCACAAAAATAACAAAGGCAAATCTTCACAACATTGTCCTAGCCCTGTTTCGCCTTCTCTGCCTCCTCCTGGTTCTTACCCAACTACATCGAACACCTTTAATGTCCTCTCATTCGGGGCTAAAGGCGATGGATTCACCGATGACTCTCAGGCATTGCTACAAGCATGGCAAGCTGCATGCAAAGTAGAAGGGGCAGTTGTGGAAATTCCTTCAGAACACAAATTTTTCATTAAGCCCATGACCCTCCAAGGACCTTGTATGCCGCAACTTCTACTTCAGATAGATGGGACAGTAGTAGCTCCTCCACAAGTAAGTTTCTGGCCTAAATCTGGTCTTTTTCAATGGATAAACATAAAATGGGTGCAAAACTTCACCATCCAAGGCAGTGGAACTGTTGATGGCCAAGGCTCTGAGTGGTGGTCTTCTTCTCAGAACAGTAAAAATAAAAGACATAAATCTATACATGTTCCAAAGATAAAACCAACAGCTTTGAGATTTTATGGCAGCAATAACGTTACAGTTCGCGATATTAGAATAGTAAACAGTCCATTATGCCATTTGAAGTTTGACAACTCTATGGGAGTTAAGGTCCAAAATGTCACAATTTCTTCACCACAAGATAGTCCCAACACTGATGGCATTCATCTTCAGAACACCAAAGATGTTGAAATACATCATTCCAACATTGGTTGTGGGGATGACTGTGTCTCCATACAAACTGGTTGCTCTAATATTCATTTGCACCATATCAACTGCGGTCCTGGTCACGGTATTAGTTTGGGAGGATTGGGAAAAGACAGAAGCATTGCCTGTGTTTCCAACATAGTTGTTCACAACATCGCCATGCAAAACACACTATATGGAGTTAGGATCAAAACTTGGCCGGTATACATCCCTTACAAATTAAATAGTCAATTTTATATCAAACGACCACATATCATGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_115368.p1 GENE.R_Transcript_115368~~R_Transcript_115368.p1 ORF type:complete len:370 (+),score=42.50,Glyco_hydro_28|PF00295.13|2.4e-57,Pectate_lyase_3|PF12708.3|4.6e-05,Pectate_lyase_3|PF12708.3|9.1,Pectate_lyase_3|PF12708.3|10,Beta_helix|PF13229.2|2.6e-06 R_Transcript_115368:32-1111(+)
MKSACKFIAILYLLVFLASLCITIPIVCVEARKSSATSHNKHHHKHKNNKGKSSQHCPSPVSPSLPPPGSYPTTSNTFNVLSFGAKGDGFTDDSQALLQAWQAACKVEGAVVEIPSEHKFFIKPMTLQGPCMPQLLLQIDGTVVAPPQVSFWPKSGLFQWINIKWVQNFTIQGSGTVDGQGSEWWSSSQNSKNKRHKSIHVPKIKPTALRFYGSNNVTVRDIRIVNSPLCHLKFDNSMGVKVQNVTISSPQDSPNTDGIHLQNTKDVEIHHSNIGCGDDCVSIQTGCSNIHLHHINCGPGHGISLGGLGKDRSIACVSNIVVHNIAMQNTLYGVRIKTWPVYIPYKLNSQFYIKRPHIM*

Click here to download the sequence:
Link to NCBI Protein BLAST