Transcript Information: R_Transcript_115369.p1


Annotated TAIR IDAT3G26610.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:9777025-9780267 | Forward length=470
E-Value1.5E-199
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.4424685997934
Replicate 24.1051829734513
Replicate 36.2981865081071
Condition 2: 8 Hour
Replicate 10.69817130195811
Replicate 20.68312266317268
Replicate 30.85027911256395
Condition 3: 24 Hour
Replicate 12.6651629571877
Replicate 21.2128146436774
Replicate 32.1397348777415


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_115369.p1 GENE.R_Transcript_115369~~R_Transcript_115369.p1 ORF type:complete len:491 (+),score=61.96,Glyco_hydro_28|PF00295.13|7.7e-81,Beta_helix|PF13229.2|0.00036,Beta_helix|PF13229.2|0.00028,Beta_helix|PF13229.2|5e+02,Pectate_lyase_3|PF12708.3|7.1e-05,Pectate_lyase_3|PF12708.3|1.1e+03 R_Transcript_115369:32-1474(+)
ATGAAAAGTGCTTGCAAATTCATAGCCATTCTTTATCTTTTGGTTTTCCTAGCAAGTTTATGTATCACAATTCCAATTGTTTGTGTAGAAGCTAGGAAGAGCAGTGCAACAAGTCATAATAAGCATCACCATAAGCACAAAAATAACAAAGGCAAATCTTCACAACATTGTCCTAGCCCTGTTTCGCCTTCTCTGCCTCCTCCTGGTTCTTACCCAACTACATCGAACACCTTTAATGTCCTCTCATTCGGGGCTAAAGGCGATGGATTCACCGATGACTCTCAGGCATTGCTACAAGCATGGCAAGCTGCATGCAAAGTAGAAGGGGCAGTTGTGGAAATTCCTTCAGAACACAAATTTTTCATTATGCCCATAACCCTCCAAGGACCTTGTATGCCACAACTTCTACTTCAGATAGATGGGACAGTAGTAGCTCCTCCACAAGTAAGTTTCTGGCCTAAATCTGGTCTTTTTCAATGGATAAACATAAAATGGGTGCAAAACTTCACCATCCAAGGCAGTGGAACTGTTGATGGCCAAGGCTCTGAGTGGTGGTCTTCTTCTCAGAACTGTAAAAATAAAAGATGTAAGTCTATACATGTTCCAAAGATAAAACCAACAGCTTTGAGATTTTATGGCAGCAATAACGTTACAGTTCGCGATATTAGAATAGTAAACAGTCCATTATGCCATTTGAAGTTTGACAACTCTATGGGAGTTAAGGTCCAAAATGTCACAATTTCTTCACCACAAGATAGTCCCAACACTGATGGCATTCATCTTCAGAACACCAAAGATGTTGAAATACATCATTCCAACATTGGTTGTGGGGATGACTGTGTCTCCATACAAACTGGTTGCTCTAATATTCATTTGCACCATATCAACTGCGGTCCTGGTCACGGTATTAGTTTGGGAGGATTGGGAAAAGACAGAAGCATTGCCTGTGTTTCCAACATAGTTGTTCACAACATCGCCATGCAAAACACACTATATGGAGTTAGGATCAAAACTTGGCCGGGAGGAACTGGATCAGTAAAAAACGTGTCATTTTCGAGCATACATGTATCGGATGTCAAAGTTCCACTGGTGATAGACCAATTCTACTGCGAAAACAACATCAACTGCAAAAACCAAACAGGGGCAGTGGCAATATCAAATGTGAAATACAATCAAATTGCAGGGACTTATTCAGCACAGCCAGTTCATCTTGCTTGTAGTGATGATGTTCCTTGTACCGACGTCGATCTCGTCGACATTCAATTGAAGCCATCATCGGTGAATAGAGGTCTAAAACAAGCATTGTGTTGGAATTCTTATGGTAAAAGTGAAGCTCCATTGCTGCCTTCAAGCATAGATTATTGCTTAAGGGAGAGGGGTGGTGGATTGGTTAAAAGGGTGCAAACATCACATTATGATATGTGTCAACAATTTGTCAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_115369.p1 GENE.R_Transcript_115369~~R_Transcript_115369.p1 ORF type:complete len:491 (+),score=61.96,Glyco_hydro_28|PF00295.13|7.7e-81,Beta_helix|PF13229.2|0.00036,Beta_helix|PF13229.2|0.00028,Beta_helix|PF13229.2|5e+02,Pectate_lyase_3|PF12708.3|7.1e-05,Pectate_lyase_3|PF12708.3|1.1e+03 R_Transcript_115369:32-1474(+)
MKSACKFIAILYLLVFLASLCITIPIVCVEARKSSATSHNKHHHKHKNNKGKSSQHCPSPVSPSLPPPGSYPTTSNTFNVLSFGAKGDGFTDDSQALLQAWQAACKVEGAVVEIPSEHKFFIMPITLQGPCMPQLLLQIDGTVVAPPQVSFWPKSGLFQWINIKWVQNFTIQGSGTVDGQGSEWWSSSQNCKNKRCKSIHVPKIKPTALRFYGSNNVTVRDIRIVNSPLCHLKFDNSMGVKVQNVTISSPQDSPNTDGIHLQNTKDVEIHHSNIGCGDDCVSIQTGCSNIHLHHINCGPGHGISLGGLGKDRSIACVSNIVVHNIAMQNTLYGVRIKTWPGGTGSVKNVSFSSIHVSDVKVPLVIDQFYCENNINCKNQTGAVAISNVKYNQIAGTYSAQPVHLACSDDVPCTDVDLVDIQLKPSSVNRGLKQALCWNSYGKSEAPLLPSSIDYCLRERGGGLVKRVQTSHYDMCQQFVN*

Click here to download the sequence:
Link to NCBI Protein BLAST