Transcript Information: R_Transcript_115658.p1


Annotated TAIR IDAT5G62170.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G51850.1); Has 381 Blast hits to 359 proteins in 81 species: Archae - 0; Bacteria - 16; Metazoa - 101; Fungi - 21; Plants - 99; Viruses - 3; Other Eukaryotes - 141 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24973115-24975475 | Reverse length=703
E-Value7.1E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9506666204996
Replicate 22.7889822608115
Replicate 32.9566340506312
Condition 2: 8 Hour
Replicate 12.3626711791202
Replicate 21.4010577594728
Replicate 32.2518915431307
Condition 3: 24 Hour
Replicate 14.9770684842015
Replicate 23.6206001436913
Replicate 34.1965148083901


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_115658.p1 GENE.R_Transcript_115658~~R_Transcript_115658.p1 ORF type:complete len:798 (+),score=135.42,DUF4378|PF14309.2|8.6e-28,VARLMGL|PF14383.2|8.4e-10,VARLMGL|PF14383.2|1e+03 R_Transcript_115658:299-2692(+)
ATGGGTAGAGAATGGTACTTCAACTGGGGCAAGTCCTCCTCCTCCAAGAAAAGAGGGGCGAAAGGCGGCGGCAGTGGTGGTGGTGGGGGTGTAAAGGGAGGAGAGAGACAAACAGCACCAGCGGCTACAGCGACAGTGGCGGCAGCAGCAGCAACAGCAGGAGGGTGCATGAATGCTGTACTTCATTTGTTTGATTTCAATCACTTCCAGCTATGCTTGCACCCTCATGACAATACTAGTAGTAGTACTATTACTCCTGTTCAGCCCACTACTTGTAACCATGACCCCACCTCTCCAAAAGGAGTGGAAGCACCAAGAAACAGCTTGGAGACTGAAGATGAGAGGTTCACTGGACAAGCTTCATTGGCTTCTATCACCGAGGATGAAAAGGATGACATATCACATATTCCTATGGCTATTGAGATCATTAAACCAAAAGGTAGAAGAGACACAAGGTTGAAGCAAGTCCAAGCACCAAGGGCCAAAATGGAGGACTTGTCATCAGAAAGCAGCTACTCCCCAGCAAGTGCAAGGACCCCGAACGTGGTGGCGAGGCTGATGGGGCTCGACATCCTCCCCCAATCCAACACCACAACACCGAGATCCTCGAGTTGTCAGGTCTTTCGTAGTCCAAGAGTGTCAGTGGCTGCTTCAACCCCACCAAGTACTAGTAAAAAAAAGAAGACCAAAACAAGAACAATAACAAGAAGCTCCTATGACAACGATGTCCCTGGGCCTTGGTCACTGCCCGAGACACCAAGGCTATCGTCGTCTACATTGACAAGGAGGAGATCAACGGATATCGTTGATCACCACCGGCTGTCGCTCCAGATCAACAACAAGGAGAACAGCATTGTCAAGGAGATGGAGTCATCTCGGCCTTCGTGTTCGGCCATTAGTACTAAGAGGAGGGAGGGGTTCAGGAATAGTGGTACTAATAATTATGAAGAGGGGAGTAGAAGTCCTGGTTATTATGCAAGGCAGATTATAAAACAGGTTAGAGAAACTGTCAGTAGGAGAGTTGGCCTTGATATTACAAACACAGTTGGAAATAGAGAGATTAGAAGAGACGAACATCTCTTAACAACAACCACCACCAATAAACCAAAAAAGTCTTCTAAGAAGGAGTCAAGTCCCGGTAAAAACTTACCACACTCACATTCAATAGCACAGTCTCCATCACCAAAGTTCAGAACCTGTGAACCAATCTCTGAAAACCAACCAGTTTCGGAACATACAAAGCCAGAAGAACCTGTTGAGGTGCTCTCGAAGCTGGTAGATAAGTTGATAACGAAGTCATTAGAAGATGAAAAAGTATCATTGAAGAAGTTTTCTGAGAAGCAAGAGGAGAAGTTGAATATGAACAAGTTTGAAACGCCTAAATCATGCTCGAAGAAGTTGCCTCCAAAGTCTTTTGATTCTATCAGGAACAAGAAAGACGAACAGTTTGTTGTTCGTCCTCCAACGGACAAGAAAACCAAGAAGACACCATTGTCAAGTGACCTCCTACATGGGACAGTGCCTTCCCTTGTCTCTCTCAAGAAGGATTCATCTTCTCCTACAAAATTACTTGACAAACAGGGAGTCTCGTCAAAGTTTCAACCATTGAAAAGCTCAACTAGCACTAGCACTAGGACCAGCACCAACACCACAGCACAGTTATCTCGGAGTCCGAGCCAACGGTACGAGAGAGGGCAAATAGAAGCAACGCATACGCCTGCCGTCCAAGAAGTGAAAATTAGGAGTAGCAGCAAGGATTCAAGTTCCGTAGCTGAGTTTCAGTACATCTGTAGAATACTGAAATGTACTGGTATTGACAGAGATACCCCTGTTTCCTTCACTAGATGGTTTTCACCTTCCCACCCTTTAAACCCATCAATTTACCACAATCTAGAGGCTGCCCATTATGCCCCTACAACAAAAAGTGATACTACTACTTGTTGTTCACCCCATGACCAATTAGGCCCTGGAATTAACAGGAAGCTAATTTTTCATCTTGCGGATGAGATTTTGGCTGATATTTTAAAACCTTACATTAAACTTAAACCATGGTTATTGGGATGTTCCTCAAGGCAAGATAGTTATTATCATCATCAACAGCAACAACAACAAATAAACGGGTTTCAATTGGTGAAAACGTTATGCACAAGGATACGGAGCTTCCCTAGCGCGAATTGTGAAACTCTTCAAGACATTGATTCCCTTGTAGAGAAGGATTTGCCTAGATTCGGAGCACAAAGCAATATGATCGCATTTGAAGAGGAAGGAGAAGCAATTGTTTCAGAGATTGAACGTGACATTGTTGATTCATTAGTCCAAGAAATAGTTGTGCTTGGTCTTGGTAACCGTTACATTGCCATGCATAGATATGTGACTAGTAGTATTAGAGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_115658.p1 GENE.R_Transcript_115658~~R_Transcript_115658.p1 ORF type:complete len:798 (+),score=135.42,DUF4378|PF14309.2|8.6e-28,VARLMGL|PF14383.2|8.4e-10,VARLMGL|PF14383.2|1e+03 R_Transcript_115658:299-2692(+)
MGREWYFNWGKSSSSKKRGAKGGGSGGGGGVKGGERQTAPAATATVAAAAATAGGCMNAVLHLFDFNHFQLCLHPHDNTSSSTITPVQPTTCNHDPTSPKGVEAPRNSLETEDERFTGQASLASITEDEKDDISHIPMAIEIIKPKGRRDTRLKQVQAPRAKMEDLSSESSYSPASARTPNVVARLMGLDILPQSNTTTPRSSSCQVFRSPRVSVAASTPPSTSKKKKTKTRTITRSSYDNDVPGPWSLPETPRLSSSTLTRRRSTDIVDHHRLSLQINNKENSIVKEMESSRPSCSAISTKRREGFRNSGTNNYEEGSRSPGYYARQIIKQVRETVSRRVGLDITNTVGNREIRRDEHLLTTTTTNKPKKSSKKESSPGKNLPHSHSIAQSPSPKFRTCEPISENQPVSEHTKPEEPVEVLSKLVDKLITKSLEDEKVSLKKFSEKQEEKLNMNKFETPKSCSKKLPPKSFDSIRNKKDEQFVVRPPTDKKTKKTPLSSDLLHGTVPSLVSLKKDSSSPTKLLDKQGVSSKFQPLKSSTSTSTRTSTNTTAQLSRSPSQRYERGQIEATHTPAVQEVKIRSSSKDSSSVAEFQYICRILKCTGIDRDTPVSFTRWFSPSHPLNPSIYHNLEAAHYAPTTKSDTTTCCSPHDQLGPGINRKLIFHLADEILADILKPYIKLKPWLLGCSSRQDSYYHHQQQQQQINGFQLVKTLCTRIRSFPSANCETLQDIDSLVEKDLPRFGAQSNMIAFEEEGEAIVSEIERDIVDSLVQEIVVLGLGNRYIAMHRYVTSSIRV*

Click here to download the sequence:
Link to NCBI Protein BLAST