Transcript Information: R_Transcript_115836.p1


Annotated TAIR IDAT5G01880.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:339017-339496 | Forward length=159
E-Value2.5E-51
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1244671388066
Replicate 22.321706296033
Replicate 32.7532136533837
Condition 2: 8 Hour
Replicate 15.0619816958247
Replicate 28.92285188855
Replicate 39.8612115389602
Condition 3: 24 Hour
Replicate 12.3178555374124
Replicate 21.5905234776859
Replicate 33.3673391825996


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_115836.p1 GENE.R_Transcript_115836~~R_Transcript_115836.p1 ORF type:complete len:208 (+),score=21.67,zf-RING_2|PF13639.2|1.8e-16,zf-RING_11|PF17123.1|2.1e-11,zf-RING_11|PF17123.1|7.1e+03,zf-rbx1|PF12678.3|1.4e-07,zf-C3HC4_2|PF13923.2|5.2e-07,zf-C3HC4|PF00097.21|8e-07 R_Transcript_115836:303-926(+)
ATGGGAGTGTATAGTTATAGCCATAGGCATCTACTAGAAACTTCACCACCAGTGAGTAGTTCTTCTTCTTCGTCTGATGGGGTCACCAACCGTACGGCGGATACAGAGTTTACACAAGCAAATTTCGACACGAACATGATAATAATCCTGGCAGCTCTGCTCTGCGCTTTGATTGTTGCTCTTGGGTTAAACTCAATGGTACGCTGCGTTTTGAGGTGCGGTAGAAGGCTTGGTATGGAAACTGCTGAGCAAGCTGCTGCTCGTATGTCGGCTACTGGGCTCAAGAAGAGTGCGCTGAGGAAGATTCCTATTTTTGTCTATGGGTCGGATCTCGGGTCGGGCTCGGGTATGGGTATTCATCCTGGGTCGGAGTGCCCCATTTGCTTGGGGGAGTTTATGGATGGGGAGAAGGTTAGAGTGTTGCCTAATTGTAATCATGGGTTCCACGTCAGCTGTATTGACACGTGGCTCGGGTCCCACTCGTCGTGTCCCAATTGCCGCCACTCGTTGGTTGATGCCCCCGCCTCGTCGAAGACGGTGCCGCCACCGCAACCGCCGCCTGATGGTGGAGGAGAGGGGGAGCATGTGGCGGTGGTGGTTGAGGTGAGTGAGGGGAGGAGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_115836.p1 GENE.R_Transcript_115836~~R_Transcript_115836.p1 ORF type:complete len:208 (+),score=21.67,zf-RING_2|PF13639.2|1.8e-16,zf-RING_11|PF17123.1|2.1e-11,zf-RING_11|PF17123.1|7.1e+03,zf-rbx1|PF12678.3|1.4e-07,zf-C3HC4_2|PF13923.2|5.2e-07,zf-C3HC4|PF00097.21|8e-07 R_Transcript_115836:303-926(+)
MGVYSYSHRHLLETSPPVSSSSSSSDGVTNRTADTEFTQANFDTNMIIILAALLCALIVALGLNSMVRCVLRCGRRLGMETAEQAAARMSATGLKKSALRKIPIFVYGSDLGSGSGMGIHPGSECPICLGEFMDGEKVRVLPNCNHGFHVSCIDTWLGSHSSCPNCRHSLVDAPASSKTVPPPQPPPDGGGEGEHVAVVVEVSEGRS*

Click here to download the sequence:
Link to NCBI Protein BLAST