Transcript Information: R_Transcript_115898.p1


Annotated TAIR IDAT5G27290.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:9618590-9620473 | Reverse length=341
E-Value1.7E-170
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3740321764783
Replicate 23.6902588610463
Replicate 31.5965301960955
Condition 2: 8 Hour
Replicate 13.264781992966
Replicate 22.5748894241365
Replicate 33.7953367660809
Condition 3: 24 Hour
Replicate 15.4959599120867
Replicate 23.141203538961
Replicate 33.3826452697932


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_115898.p1 GENE.R_Transcript_115898~~R_Transcript_115898.p1 ORF type:complete len:330 (+),score=74.45 R_Transcript_115898:163-1152(+)
ATGGCATTGGGCACCCTCACTTCACTTGGTACCTTTGCATTTACAATATCATGTGGGCCCACCTCCGAAGCTAGAGGAGGAGTTGACAGAAGAAAGCTTTTGGACAAGCTAGACAAGGAGCTCTCCAATGGCGATGAAAGGGCTGCTCTTTCTCTTGTCAAACATTCTCAGGGCCAGCCTGGTGGTCTCCGTTGCTTTGGGACAGCTCGACAGGTGCCTCAAAGGCTATATACTTTGGATGAACTGAAGTTGAATGGAATTGAAGCTGCATCTCTCTTATCACCTGTTGATACCACTCTTGGTTCGATTGAGAGGAACCTGCAGATTGCTGCTGTGTTAGGTGGCGTTGCTGCTTGGAATGCCCTTGGACTTAGCCCCCAACAAGTCCTTTATTCCTCTTTGGGATTGTTGTTTTTTTGGACATTGGACTTGGTTTCTTTTAATGGGGGAATCGGAAGCTTGGTTCTTGATACAATTGGCCATACTGTTAGTAAAAAGTATCACAACCGTGTTATTCAACATGAGGCTGGCCACTTCTTGATCGCCTACTTGGTTGGTATCCTCCCAAGGGCATACACACTTTCAAGCTTAGAAGCATTGAGTAAAGAAGGCTCCCTTAATGTTCAAGCCGGGTCAACTTTTGTGGACTTTGAATTCCTTGATGAAGTCAACACCGGCAAAGTGTCAGCCACTATGCTGAATAGATTCTCATGTATAGCCTTGGCCGGTGTAGCAACGGAGTACCTGTTATACGGATATGCAGAAGGAGGCTTGGCTGATATCAACAAGCTGGATGTATTGCTCAAGAGCTTAGGCTTCACACAGAAGAAAACAGATTCACAGGTGAGATGGGCAGTTTTAAACACTATTCTTCTCCTACGACGTCATGAAGAAGCTCGAGCAAGACTTGCTGATGCAATGTCTGCGGGCAAATCTGTCGCTTCTTGCATTAATGTGATTGAGGAAGCCATTGTTGATGAAGAGATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_115898.p1 GENE.R_Transcript_115898~~R_Transcript_115898.p1 ORF type:complete len:330 (+),score=74.45 R_Transcript_115898:163-1152(+)
MALGTLTSLGTFAFTISCGPTSEARGGVDRRKLLDKLDKELSNGDERAALSLVKHSQGQPGGLRCFGTARQVPQRLYTLDELKLNGIEAASLLSPVDTTLGSIERNLQIAAVLGGVAAWNALGLSPQQVLYSSLGLLFFWTLDLVSFNGGIGSLVLDTIGHTVSKKYHNRVIQHEAGHFLIAYLVGILPRAYTLSSLEALSKEGSLNVQAGSTFVDFEFLDEVNTGKVSATMLNRFSCIALAGVATEYLLYGYAEGGLADINKLDVLLKSLGFTQKKTDSQVRWAVLNTILLLRRHEEARARLADAMSAGKSVASCINVIEEAIVDEEI*

Click here to download the sequence:
Link to NCBI Protein BLAST