Transcript Information: R_Transcript_115905.p1


Annotated TAIR IDAT5G27290.1
Annotated Gene Nameunknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:9618590-9620473 | Reverse length=341
E-Value2.5E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.61526834678827
Replicate 21.1795674391179
Replicate 31.1582058335133
Condition 2: 8 Hour
Replicate 11.2380493512652
Replicate 20.75373759015232
Replicate 30.91777806507575
Condition 3: 24 Hour
Replicate 10.77385867059677
Replicate 21.1151535394112
Replicate 31.1066816976521


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_115905.p1 GENE.R_Transcript_115905~~R_Transcript_115905.p1 ORF type:5prime_partial len:178 (-),score=21.55 R_Transcript_115905:203-736(-)
GGAATCGGAAGCTTGGTTCTTGATACAATTGGCCATGCTGTCAGTAAAAAGTATCATAACCGTGTTATTCAACATGAGGCTGGCCACTTCTTGATCGCCTACTTGGTTGGTATCCTCCCAAGGGCATACACACTTTCGAGCTTAGAAGCATTGAGAAAAGAAGGCTCCCTTAATGTTCAAGCCGGGTCAACTTTTGTGGACTTTGAATTCCTTGATGAAGTCAACACCGGCAAAGTGTCAGCCACTATGCTGAATAGATTCTCCTGTATAGCATTAGCCGGTGTAGCAACGGAGTACCTGTTATACGGATATGCAGAAGGAGGCTTGGCTGATATCAACAAGGTTTGCTCATTTCACTTGTACGTTTACAATGATATTGCTCTCATCTGCTCCAATATTCTAACTTTGGAAAGTTTTTGGCGTGCTGAGGAAGCTGGATGTATTGCTCAAGAGCTTAGGCTTCACACAGAAGAAAACAGATTCACAGGTGAGATGGGCTGTTTTAAACACTATTCTTCTCCTACGACGCCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_115905.p1 GENE.R_Transcript_115905~~R_Transcript_115905.p1 ORF type:5prime_partial len:178 (-),score=21.55 R_Transcript_115905:203-736(-)
GIGSLVLDTIGHAVSKKYHNRVIQHEAGHFLIAYLVGILPRAYTLSSLEALRKEGSLNVQAGSTFVDFEFLDEVNTGKVSATMLNRFSCIALAGVATEYLLYGYAEGGLADINKVCSFHLYVYNDIALICSNILTLESFWRAEEAGCIAQELRLHTEENRFTGEMGCFKHYSSPTTP*

Click here to download the sequence:
Link to NCBI Protein BLAST