Transcript Information: R_Transcript_116079.p1


Annotated TAIR IDAT3G48900.2
Annotated Gene Namesingle-stranded DNA endonuclease family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:18131854-18136239 | Forward length=600
E-Value3E-207
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0616291987423
Replicate 21.850913535321
Replicate 32.0508787103993
Condition 2: 8 Hour
Replicate 11.214175121351
Replicate 21.3552049600719
Replicate 31.3501197982106
Condition 3: 24 Hour
Replicate 13.1622324005102
Replicate 21.7316112352106
Replicate 33.0751320634484


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_116079.p1 GENE.R_Transcript_116079~~R_Transcript_116079.p1 ORF type:complete len:726 (+),score=153.07,XPG_I|PF00867.14|1.9e-19,XPG_I|PF00867.14|2.9e+03,XPG_N|PF00752.13|4.5e-13 R_Transcript_116079:172-2349(+)
ATGGGGGTGAAAAATTTATGGGATATTTTGGAGTCTTGCAAGAAAACCTTGCCACTTCATCACCTCCAGAATAAGAGGGTGTGCATAGACCTGTCATGTTGGATGGTTCAGCTCCAAAAAGTGAATAAATCTTACTGTGCTGCCAAAGAGAAGGTTTACCTTAGGGGTCTCTTTCACCGTCTCCGGGCTCTTATTGCTCTCAATTGTAGTCTTATCTTTGTAACTGATGGAGCAATTCCTGCTGTCAAAATTTCTACATACAGAAAGCGGTTAAATGCTGCCCATGAGGATGCAGAAGATGATGCAGAGAGAGACAAGATTTCTTCCCTTCGAAGAAATAAGGGCTCTGAGTTCTCTTGTATGATCAAAGAGGCAAAAACCTTAGGCAGGGCACTTGGCATTCCTTGCTTAGATGGGATTGAGGAAGCTGAAGCACAATGTGCGCTATTGAACTCAGAATCAATATGTGATGGATGTTTCAGTTCAGATTCAGATGTTTTCCTTTTTGGTGCCAGGACTGTGTACAGAGATATTTGCCTTGAAAAGGGGGGTTATGTTGTTTGCTATGAAATGGGAGACATAGAGCATAAACTTGGACTTGGAAGAAATTCATTGATTGCCCTAGCCCTTCTTCTGGGAAGTGATTATTCTCATGGAGTCTATGGATTTGGACCTGAGTCAGCATGCCAAGTCATTAGATCAGTCGGCGAAGATGCCATTCTTCAACGCATTGCATCAGATGGTATATCTTTCTTAAAGTCGCTGAAAACCTCGAAGAAACATGGACAGTTCCCTGTGAACAACAGAAAAGAGAATAATCCAGCTCCTACTGGAAAGGCTACTGGGAATGAATTGTTACGGGTTGTGGATGCATATATGAAGCCTAAGTGTCATTCTGCAGACTCGGATCCTGTATATAGGGCTCTTGCTGTGCATCCTTTTCAGCGTACTGAGCTTCAGCAAATATGTGCTCAGTTCTTTGAGTGGCCTCCTGAGAAAACAGATGAATATATCCTTCCAAGGATTGCGGAAAGAGATCTATGGAGATTTGCCAATTTGCGTTCATCATCATCGCAATTGGGAGTTGCACTTCCATTGCATGAGATGCCAGTTAAGTGTCCTATAGCAGAAGTTCTTAAGCACAGAAGAGTTGTAGGTAAAGAATGCTTCGAAGTGTCATGGGAAAATTTTGACGGCCTTAAAACTTCCATAGTACCAGCTGATCTTGTAGAGAGTGCTTGTCCCGAGAAAATTGAAGAATTTGAGGAAAGGAGAGCTCAGAAGAAGCAGAAAAACAAACCAAGACCTAGCAAAAAATCAGAAGACAAAGCTTCTGTGGCCAACGTTGATCAGAAACTCCAACAATTGTTACTCGATATCGAGGCTGAGGACAATGTGAGAAGCAGAAACCCGTTGTGCTCTAGTACATCTGTGTCAGGAAGCAGCATAGTCGGTTCTTTGTTCTCCAGTACATCTATGTCAGGAAGCAGCAGCATAGTCATTTCTTCATGTCGTAGTACATTTATGTCAGAAAGCAGTAGTGTGGTCGATTTGACAATTTCTGACCCTTTCTTAAATGGACAGTATGAATGTAACATGACTGGCATGCCCAGTAAAGATAGCCACTCAGGCCCTCCTCCAGCTACAACATCTTTGTCACGAAGCAGCGACATAGACGATTCACCGTGCTCTATTACATCTATGTCAGGAAGCATCAGCATAGTCGATTTGACGATGCATGACACTTTTGGTAGTGAAGACTATGAATACAACATAGCTGGCATGCCCACAAGGGATATCCACTTGGACCCCTCTCCAACTACCATGGAAATGGATGTCATTGACCTTTTGAGCCCACCCCCAGCACCTAGCACACGTTTTCTTTCAAAATGTAAAGGCGACACAGAACCAGATTATCTACCGAACATGGATGGCATGCCAACCAAGGATGGCGGCTCAGAGGCTCGTCAAACTAGTACAATGGAAATGGATGTTATTGACCTCTTGAGTCCTCCTCAGGCACCTAGCACAGGTTTCCTTTCAAAATGTAAGGGCGACGCAGAACCAACAAGTGTTATTGATCTGAGTGGTTCAGATGTTGAAATGTCACCTGAACATGCTCAGAAGTCAAGAGAACTCAGATTGTTCCTGGCCAGCATTAGGGCAGAAATCTCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_116079.p1 GENE.R_Transcript_116079~~R_Transcript_116079.p1 ORF type:complete len:726 (+),score=153.07,XPG_I|PF00867.14|1.9e-19,XPG_I|PF00867.14|2.9e+03,XPG_N|PF00752.13|4.5e-13 R_Transcript_116079:172-2349(+)
MGVKNLWDILESCKKTLPLHHLQNKRVCIDLSCWMVQLQKVNKSYCAAKEKVYLRGLFHRLRALIALNCSLIFVTDGAIPAVKISTYRKRLNAAHEDAEDDAERDKISSLRRNKGSEFSCMIKEAKTLGRALGIPCLDGIEEAEAQCALLNSESICDGCFSSDSDVFLFGARTVYRDICLEKGGYVVCYEMGDIEHKLGLGRNSLIALALLLGSDYSHGVYGFGPESACQVIRSVGEDAILQRIASDGISFLKSLKTSKKHGQFPVNNRKENNPAPTGKATGNELLRVVDAYMKPKCHSADSDPVYRALAVHPFQRTELQQICAQFFEWPPEKTDEYILPRIAERDLWRFANLRSSSSQLGVALPLHEMPVKCPIAEVLKHRRVVGKECFEVSWENFDGLKTSIVPADLVESACPEKIEEFEERRAQKKQKNKPRPSKKSEDKASVANVDQKLQQLLLDIEAEDNVRSRNPLCSSTSVSGSSIVGSLFSSTSMSGSSSIVISSCRSTFMSESSSVVDLTISDPFLNGQYECNMTGMPSKDSHSGPPPATTSLSRSSDIDDSPCSITSMSGSISIVDLTMHDTFGSEDYEYNIAGMPTRDIHLDPSPTTMEMDVIDLLSPPPAPSTRFLSKCKGDTEPDYLPNMDGMPTKDGGSEARQTSTMEMDVIDLLSPPQAPSTGFLSKCKGDAEPTSVIDLSGSDVEMSPEHAQKSRELRLFLASIRAEIS*

Click here to download the sequence:
Link to NCBI Protein BLAST