Transcript Information: R_Transcript_116385.p4


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value9E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.17165794001303
Replicate 20.26327649424825
Replicate 30.28723181938749
Condition 2: 8 Hour
Replicate 10.53730738128751
Replicate 21.0514521241937
Replicate 31.8208512221078
Condition 3: 24 Hour
Replicate 10.35984023867875
Replicate 20.20741622781107
Replicate 30.34306747158146


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_116385.p4 GENE.R_Transcript_116385~~R_Transcript_116385.p4 ORF type:complete len:319 (+),score=23.19,UBN2|PF14223.2|1.1e+03,UBN2|PF14223.2|1.8e-38,UBN2_2|PF14227.2|6.5e+03,UBN2_2|PF14227.2|2.8e-17,DUF4219|PF13961.2|6.6e-07 R_Transcript_116385:5722-6678(+)
ATGGCCACATCAACCTCAAACACTATTTTCAATTATGCCCCAAATAATTGGGTTCCAATATTCAATGGGGAACACTTTGAATATTGGAGTATTCAAATGAGGACTCTGTTAACATCACAGGGCCTCTGGGATTTGGTACAAAATGGGTACCAACAACCCAAAGATGCTAGTGAATTAGCATCTTGGGATGAAAATGCTAAAAAGCAATATGAAGAAAATCAAAGAAAAGACCAGTGTGCGTTGTCCTATATTCATCGGGGTGTCGATATGACAATATTTCCCCGCATCATGGCCGCCACAACGGCTAGGGAGGCTTGGAAAATTTTACAAAATGAGTTCAAGGGCTCCAATAAGGTAATCACTATCAAACTCCAATCTCTTTGGAAAGATTTTGATAATTTACAAATGACAGAAGGTGAAACAATACAGACATTCTTCGGTCGTGTTACAATAATTGTAAATCAAATACGCAGTTATGGAGACACGATCGAAGATGTCAAAATAATACAAAAAATATTAAGAAGCCTTCTGTCAAAATATGATCATATAGTGGCTGCAATTGAAGAATCTAAAGATTTAACTCAACTAACCTTAACTGAATTAATGGGTTCTTTACAAGCCCATGAAGACAGAATGAAAAGATTTTCAGAGCAGCCACTTGAACAAGCCTTTCAGGCCAAATTAAAATTTTCAAACATAGAAAATAAAAATCAATATAGCCACGGTAAAAATTTTCAATCAAAAAGGGGACAATCTAATAACCGTGGCAGGGGGAAAGGAACTTATAAAAATCAAGGAGACAGAGAAAATAGTCAATCTAGTCCATATTGTAAATTGTGCAAGAAAAATGGCCATGACACAAAAGATTGCCGGTATAAGTGTAAAAGATGCAAAAACCATATGCACTTTGAAAAAGATTGTTGGTTCCGGCAAAAAGAGCAGGCCAATTTTACATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_116385.p4 GENE.R_Transcript_116385~~R_Transcript_116385.p4 ORF type:complete len:319 (+),score=23.19,UBN2|PF14223.2|1.1e+03,UBN2|PF14223.2|1.8e-38,UBN2_2|PF14227.2|6.5e+03,UBN2_2|PF14227.2|2.8e-17,DUF4219|PF13961.2|6.6e-07 R_Transcript_116385:5722-6678(+)
MATSTSNTIFNYAPNNWVPIFNGEHFEYWSIQMRTLLTSQGLWDLVQNGYQQPKDASELASWDENAKKQYEENQRKDQCALSYIHRGVDMTIFPRIMAATTAREAWKILQNEFKGSNKVITIKLQSLWKDFDNLQMTEGETIQTFFGRVTIIVNQIRSYGDTIEDVKIIQKILRSLLSKYDHIVAAIEESKDLTQLTLTELMGSLQAHEDRMKRFSEQPLEQAFQAKLKFSNIENKNQYSHGKNFQSKRGQSNNRGRGKGTYKNQGDRENSQSSPYCKLCKKNGHDTKDCRYKCKRCKNHMHFEKDCWFRQKEQANFT*

Click here to download the sequence:
Link to NCBI Protein BLAST