Transcript Information: R_Transcript_116387.p1


Annotated TAIR IDAT2G12880.1
Annotated Gene NameZinc knuckle (CCHC-type) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:5291523-5291882 | Forward length=119
E-Value0.0004
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.296317156511
Replicate 219.899106570316
Replicate 318.390682440616
Condition 2: 8 Hour
Replicate 112.73730266852
Replicate 210.782087918671
Replicate 312.460369285729
Condition 3: 24 Hour
Replicate 122.248896315685
Replicate 213.149334873005
Replicate 325.942908880669


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_116387.p1 GENE.R_Transcript_116387~~R_Transcript_116387.p1 ORF type:complete len:421 (+),score=85.75,Retrotrans_gag|PF03732.13|7.3e-15 R_Transcript_116387:373-1635(+)
ATGGCTATGACACCAGAGCAGATTTCTGCAAGGTTGAGGGCTACTGAAGATCTGAATGCGAACATGGTCGCTATGCTACAAAGGCTTGTTGAGAGAGGAACTGTTGAAGATCCATCCGCCTCAATGCTGAAGAAGATTGCTAGCCACCATCCACCTACATATGATGGCAAGGAAGATCCAGCTGTCCTTGAACATTGGATACGAGAGATGGACAAATTGTTCCTGGCAATCGGATGTCCAGAAAACTTACGAGTCAACAATGCCACCTACTACCTGCAAGAAGAAGCTGACCGTTGGTGGATTTCAGAAGGCCCTGGTCTGCTTGAAAGCCCTGGCTTTGGCTGGGACGCTTTGAAAACTGCCTTGCGAAATCGTTTTTATCCTGAGCATCTAAAAAGGCAGAAGTACAATGAATTCGTTAACCTGAGGCAAGGTAGAATGACGATCACCGAATATGCCAACAAGTTCACTGATCTTGCCAGATTTGCTCCGAACTTGGTGCCTGATGAGAGATCAAAAGCACACAAGTTTGAGGATGGCCTCAATTTCCACATCCAAGAACTCCTTGGAGGTATTTGCTCCAATACCTTCCAAGAGGCATATGGACGAGCTGCTAACTTGGCTCGCATCCTCCAGAGGAAAGAAGAAATCATTGGGAGAAACAGGAAAAGAGACAGTGGCTCTGGCTCCAGCTCACATTCAAGTCCACACTTTGGTGATAAGAGGCCACGTTTTGGCAATGGGAACCTAGGAAGTCATGGTCAGAACTACCAAAGTCCTGGAGGTGACAGAAGGAACTTTCAAGGTAATAGCCATTATCAACAGCAACGTCTTCCAACCTCTCAGAGGAACCAACCCCCACAGAGGAACTGCTATAAGTGTGGGAAGCGACTCCATCCTGGTGCGTCATGTGATGGCGTTCCCTTCACCTGCTTTGATTGTGGAGGTAAGGGGCACAGGTCCTTTGAATGTCCTCAGAAGAAAAGGGGAACTCTGCAGCAGCAACAACAAGGTTTCCAGCATAGCCAGACCTTTAGGCCTAATAATGAAGGCTTTAGGCCCAACCAGAGTTTCAATGGAGCTGTAGGTGGGACTAACAATGGCAATGGGTCCCGCCCAAATAACCCGCCCCAAAATGGCAACAGAAATGGAGGAAACAATGGACGTATCTTTGTGATGAACCAAGTACAGGCTGAGGCAGATCCCAATGTAGTCACGGATCACGTCGTAGACGGTACCGAGGATCATCGCGACGATTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_116387.p1 GENE.R_Transcript_116387~~R_Transcript_116387.p1 ORF type:complete len:421 (+),score=85.75,Retrotrans_gag|PF03732.13|7.3e-15 R_Transcript_116387:373-1635(+)
MAMTPEQISARLRATEDLNANMVAMLQRLVERGTVEDPSASMLKKIASHHPPTYDGKEDPAVLEHWIREMDKLFLAIGCPENLRVNNATYYLQEEADRWWISEGPGLLESPGFGWDALKTALRNRFYPEHLKRQKYNEFVNLRQGRMTITEYANKFTDLARFAPNLVPDERSKAHKFEDGLNFHIQELLGGICSNTFQEAYGRAANLARILQRKEEIIGRNRKRDSGSGSSSHSSPHFGDKRPRFGNGNLGSHGQNYQSPGGDRRNFQGNSHYQQQRLPTSQRNQPPQRNCYKCGKRLHPGASCDGVPFTCFDCGGKGHRSFECPQKKRGTLQQQQQGFQHSQTFRPNNEGFRPNQSFNGAVGGTNNGNGSRPNNPPQNGNRNGGNNGRIFVMNQVQAEADPNVVTDHVVDGTEDHRDDF*

Click here to download the sequence:
Link to NCBI Protein BLAST