Transcript Information: R_Transcript_116389.p5


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value1E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2285646796445
Replicate 20.70660626401003
Replicate 30.66077127681209
Condition 2: 8 Hour
Replicate 10.94176403643251
Replicate 21.7200678339374
Replicate 31.8326145337891
Condition 3: 24 Hour
Replicate 11.2141148053113
Replicate 21.4844885791735
Replicate 30.73660544619366


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_116389.p5 GENE.R_Transcript_116389~~R_Transcript_116389.p5 ORF type:5prime_partial len:208 (+),score=48.47,UBN2|PF14223.2|4.1e+03,UBN2|PF14223.2|5.6e-43,UBN2_2|PF14227.2|5e+03,UBN2_2|PF14227.2|8e-23,UBN2_3|PF14244.2|7.6e-06,UBN2_3|PF14244.2|1.5e+02 R_Transcript_116389:2-625(+)
GATGAAAGTACATTAAGTGAAGCACAGAAGAAGAAGCTTCATGAAGAAAGGATGAAGGATGCAAAGGTTTTATATTTGATACAACAAGGTGTTACGGATGTAATATTTCCAAGGATTTTGAGAGCTAATACCGCAAAGGAAGCATGGGAGATTCTACAACAAGAGTTCCAAGGAGACACCAAGGTGAGAAGTATTAAACTACAATCTCTAAGAAGAGAGTTTGAAAACTTAAAAATGAAAAATAATGAGTTGATGAAAGATTATTTTTCAAAAGTGATTGAAATAGTAAATCAAATGAAATCTTATGGAGAAGAAATTTCGGATGAAAAAATTGTCAAAAAGATTTTAGTAAGCTTACCAGAAGCATATGATGGTATAGTAGCTATAATTGAAGAGACAAAAGATTTATCTAAAATTACGGTGGAACAACTTATGGGATCACTAGAGTCACATGAACAAAGGAAAAAGAGGCATGAAGATGAAGAGCTTGAGTGTGCTTTACAAGCAAAATTGTCATTTAAGAAAGATCAAGAAGGGAGGAGAAATGTGACAAGGAGTAAAAATGATGATGGAAATGGAGTTAAACAAGAAGAAAATAAAGGGGTAGAAACTAAAACAATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_116389.p5 GENE.R_Transcript_116389~~R_Transcript_116389.p5 ORF type:5prime_partial len:208 (+),score=48.47,UBN2|PF14223.2|4.1e+03,UBN2|PF14223.2|5.6e-43,UBN2_2|PF14227.2|5e+03,UBN2_2|PF14227.2|8e-23,UBN2_3|PF14244.2|7.6e-06,UBN2_3|PF14244.2|1.5e+02 R_Transcript_116389:2-625(+)
DESTLSEAQKKKLHEERMKDAKVLYLIQQGVTDVIFPRILRANTAKEAWEILQQEFQGDTKVRSIKLQSLRREFENLKMKNNELMKDYFSKVIEIVNQMKSYGEEISDEKIVKKILVSLPEAYDGIVAIIEETKDLSKITVEQLMGSLESHEQRKKRHEDEELECALQAKLSFKKDQEGRRNVTRSKNDDGNGVKQEENKGVETKTI*

Click here to download the sequence:
Link to NCBI Protein BLAST