Transcript Information: R_Transcript_116481.p2


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value1E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.031240731905
Replicate 21.1862316619377
Replicate 31.5529991590612
Condition 2: 8 Hour
Replicate 12.6284261807777
Replicate 24.8006412992376
Replicate 32.358683865926
Condition 3: 24 Hour
Replicate 12.3346922604445
Replicate 20.99684785946112
Replicate 30.86561543959481


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_116481.p2 GENE.R_Transcript_116481~~R_Transcript_116481.p2 ORF type:3prime_partial len:177 (+),score=9.18,gag_pre-integrs|PF13976.2|4.4e-15 R_Transcript_116481:1064-1591(+)
ATGGGGAACAATTCATGTGTTGAAGTTCTTGGAATAGGCACTTGCAAGTTAGAAATGCGAGGTGGCCGTACTTTATATCTCCATGATGTTTTATATGATCCAAATGTTCGACGAAATCTAGTTTCAGTTACTGTCCTTCTAAACTTAGGTTATAAGATTACATTTCATAATGGTTGTGTAAACTTTTATTTGGGTACTTGTTATTATGGTAGGGGACATCTAGTTGATGGATTTATGGTGCTAGACACTATTAATAATTGTAATAATGACAACTCTAGTTGCTATTCTTATGTTGCTTCATCTAGTTACAATGGATGTGATGAACCCATTACTTGGCATGCTAGATTAGGGCATATTGGACAAGATAGAATGAATAGATTGGCTAAAGAAGGCCTTTTAGGCACTCTTAGCAAAGTTAACTTGTCGATTTGTGAGCCCTGCTTAGCAGGAAAAGCAACTAGAAAGCCTTTTGGTAAGGCACATAGAGCCACATTGCCTTTACAATTAATTCATACTAATATTTGTGGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_116481.p2 GENE.R_Transcript_116481~~R_Transcript_116481.p2 ORF type:3prime_partial len:177 (+),score=9.18,gag_pre-integrs|PF13976.2|4.4e-15 R_Transcript_116481:1064-1591(+)
MGNNSCVEVLGIGTCKLEMRGGRTLYLHDVLYDPNVRRNLVSVTVLLNLGYKITFHNGCVNFYLGTCYYGRGHLVDGFMVLDTINNCNNDNSSCYSYVASSSYNGCDEPITWHARLGHIGQDRMNRLAKEGLLGTLSKVNLSICEPCLAGKATRKPFGKAHRATLPLQLIHTNICG

Click here to download the sequence:
Link to NCBI Protein BLAST