Transcript Information: R_Transcript_11666.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value6E-161
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.244369122731
Replicate 27.6026208013752
Replicate 311.631568312615
Condition 2: 8 Hour
Replicate 111.290511984161
Replicate 214.517177885579
Replicate 316.482792105076
Condition 3: 24 Hour
Replicate 116.430905880082
Replicate 211.885507266351
Replicate 314.148063708504


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_11666.p1 GENE.R_Transcript_11666~~R_Transcript_11666.p1 ORF type:complete len:707 (+),score=120.70,SEO_N|PF14576.2|1.3e-124,SEO_C|PF14577.2|2.2e-105 R_Transcript_11666:85-2205(+)
ATGGCAACAAGTGGTCCAGCACCACCCACAAGGCAGCTGATCAAGGGTGATCGTCGGATGTTCTCAGCATCCGACGACAGCACCATGCTTAAGCAGATTCAAGGCACTCATGCTCCTGATGGCCGCGATGTTGATGTCAGGCCCATCCTTGACATTGTTGAGGATGTCTTTCGACGTGCTGCCCCCAGCTTCGATGGTGTTATTAATGGGACCCATCACCGTATGGATTCTTTGGAAGACAAGACCAGTGAAGCTGTCTTTGAAGGAAATGGGATGCTTGAAGCATTGGCTTATATCATACAAAAAGTCTTATGTGAGATATCATGCAAATGCTCAGGAGGAGGAGATGCACACGCAACAACCATGTCGCTCCTGAACATGCTCTCAAACTATGCGTGGGATGCAAAGGTGGTGATTTCCCTTGCTTCCCTGGCTATAACTTACGGGGAGTTCTGGCTCGTTGTTGAGCTCTATGCAAAGCACCCTCTTGCCAAGTCAGTGGCTGTTCTCAAGCAGTTGCCAGAACTGATTGAGCACTCAAATGCCTTGAAATCGCGCTTTGATGGTCTAAATAGCCTCATCAAGGCCATGTTAGATGTGACCAAGAGAATTGTGGAGTTCAGGCAACTGCCTCACCAGTACATCTCACCTGAGCACCCGCCTTTGTCCGTTGCTATGACACATATTCCTACTGCTGCTTACTGGACTATACGCAGTGTGGTCGCCTGTGCTCAACAGATTGCTAGCCTTATAGGCATGAGTTATGAGTTTATTACATCCACCACAGAGGTGTGGGAACTGTCGAGCTTAGCTCACAAGGAGAGGAACATACATGATCACCTTATGCAACAGCTTGCTCTTTGTCATCAACATATAGATGAAAAGAAGCACATAGAGGCATACCTCACTCTCGTCCGCCTCTTTGATATGCCCCACCTTGACAACACCAGGATTCTCAGGCATCTGATATACCTCAAAGATGATATGCTGCCCCTTTTTGAAGGCTCTACCAAATCAAGGGTTCATGTTGAAGCGCTAAGGAGAAAAACAGTGCTGCTACTCATATCAGACCTTGATATCTCCCACGAAGAGTTGATGATCCTACACCATATCTACAGGGAATCAAGGTCGCGGCCTGAGTTCCAATATGAAATTGTTTGGATCCCAATTGTGGACAGATCTGCTCCTTGGACTGAAGCACAACAGGAACGATTCCAGCAACTCCAGTCGATGATGCCTTGGTACACTTTGCACCACCCCAAACTACTTGAACCACCAGCTCTCAAGTATATCAAAGAAGTATGGCGGTTTGCCAAGAAGATGATTGTGGTTGTGTTGGACCCGCAAGGAAAAGTGGCATGCCCAAATGCCCTTCACATGATCTGGATTTGGGGAAATTCAGCCTTCCCTTTTACTGCTATGAAGGAGGAAGCTCTATGGAGGGAAGAGGTTTGGAGGCTCGAGCTAGTCGTGGATGCCATTGATCCTAACATACTTGAATGGATAGCACAAGGGAAACACATATGTGTATACGGAGGGGAGGACATCGACTGGATCAGAAGATTCACGAACACCACAAAACAAATAGCCAACACTGCAGGAATAGATCTTGAGCTGGTCTATGCAGGGAAAAGCAACGCAAAAGAGCGTGTCAGGAAGATCACAGGAATCATAAACCAAGAGAGACTCAGCCATTTCTGGCCTGACATCACCTCAGTCTGGTACTTCTGGACTAGGCTCGAGTGCATGCTCTACTCGAAAATGCAGCATGGAAGGAACGTGGAGAGTGATCACATAATGCAGGAAGTCATGACTGTTCTGAGCTTCGATGGGAGTGACCAAGGGTGGGCCATCTTTTGCCTTGGATCAACTGAGATGACAAGGGCTAAAGGTGACATGATACTCGAGAGCTTTGGAAGGTTCGAGGAATGGGAGGAGAATGCGAGGGTGAAAGGCTTCGTGCCAGCTCTCAGGGAACACCTTCAGCAGCTTCACACCCCACATCACTGCAATAGGCTCATACTTCCTGGGATCGAAGGAGGAATACCCGAGAGAGTGGTTTGCGCAGAGTGTGGAAAACAGATGGAGAAGTACTTCATGTACCGCTGTTGCACTGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_11666.p1 GENE.R_Transcript_11666~~R_Transcript_11666.p1 ORF type:complete len:707 (+),score=120.70,SEO_N|PF14576.2|1.3e-124,SEO_C|PF14577.2|2.2e-105 R_Transcript_11666:85-2205(+)
MATSGPAPPTRQLIKGDRRMFSASDDSTMLKQIQGTHAPDGRDVDVRPILDIVEDVFRRAAPSFDGVINGTHHRMDSLEDKTSEAVFEGNGMLEALAYIIQKVLCEISCKCSGGGDAHATTMSLLNMLSNYAWDAKVVISLASLAITYGEFWLVVELYAKHPLAKSVAVLKQLPELIEHSNALKSRFDGLNSLIKAMLDVTKRIVEFRQLPHQYISPEHPPLSVAMTHIPTAAYWTIRSVVACAQQIASLIGMSYEFITSTTEVWELSSLAHKERNIHDHLMQQLALCHQHIDEKKHIEAYLTLVRLFDMPHLDNTRILRHLIYLKDDMLPLFEGSTKSRVHVEALRRKTVLLLISDLDISHEELMILHHIYRESRSRPEFQYEIVWIPIVDRSAPWTEAQQERFQQLQSMMPWYTLHHPKLLEPPALKYIKEVWRFAKKMIVVVLDPQGKVACPNALHMIWIWGNSAFPFTAMKEEALWREEVWRLELVVDAIDPNILEWIAQGKHICVYGGEDIDWIRRFTNTTKQIANTAGIDLELVYAGKSNAKERVRKITGIINQERLSHFWPDITSVWYFWTRLECMLYSKMQHGRNVESDHIMQEVMTVLSFDGSDQGWAIFCLGSTEMTRAKGDMILESFGRFEEWEENARVKGFVPALREHLQQLHTPHHCNRLILPGIEGGIPERVVCAECGKQMEKYFMYRCCTE*

Click here to download the sequence:
Link to NCBI Protein BLAST