Transcript Information: R_Transcript_117209.p1


Annotated TAIR IDAT3G54890.1
Annotated Gene Namephotosystem I light harvesting complex gene 1
Annotated Gene Symbol(s)LHCA1
Annotation TypeOrtholog
Chromosome Positionchr3:20339706-20340922 | Reverse length=241
E-Value3.3E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 126.529607217587
Replicate 23.6552263882624
Replicate 37.6046659226093
Condition 2: 8 Hour
Replicate 115.960422091119
Replicate 23.6211954398681
Replicate 33.3804618969142
Condition 3: 24 Hour
Replicate 13.9037566945894
Replicate 23.0359465679337
Replicate 33.8104101276785


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_117209.p1 GENE.R_Transcript_117209~~R_Transcript_117209.p1 ORF type:complete len:247 (+),score=45.96,Chloroa_b-bind|PF00504.17|8.9e-46 R_Transcript_117209:83-823(+)
ATGGCTTCCAATGCCTTAATGAGCTGTGGCATCAATGCTGCCGTTTTCCCCTCTTCTCTCTCCTCCTCTAAGTCGAAATTCGCGGCCTCTGTGCCGTTGGCAAATGTATCATGCAAAGCATCATCTAGGTTCACCATGTCTGCAGAGTGGATGCCTGGCGAGCCTAGACCACCTTACCTTGATGGATCAGCTCCCGGTGATTTTGGGTTCGACCCACTTCGGCTAGGGGAAGTACCCGAGAATCTGGAGAGGTTCAAGGAGTCTGAGCTCATCCATTGCAGATGGGCAATGCTTGCTGTTCCAGGGATCTTAGTACCTGAGGCCTTGGGATTAGGCAATTGGGTGAAAGCTCAAGAATGGGCAGCACTGCCAGGAGGTCAAGCCACATACTTGGGGAACCCAGTGCCATGGGGAAACCTGCCTACCATTTTGGCTATAGAGTTCCTTGCCATCGCCTTCGTAGAGCACCAACGGAGCATGGAGAAAGACCCTGAAAAGAAGAAGTACCCTGGTGGAGCTTTCGACCCTTTGGGTTACTCTAAGGACCCTAAGAAATTCCACGAATTGAAAGTCAAGGAGATCAAGAATGGCCGTCTTGCATTGCTTGCTTTTGTGGGTTTCTGCGTTCAACAATCGGCATATCCGGGAACAGGCCCTCTAGAAAACTTGGCAACTCACTTGGCTGACCCATGGCACAACAACATCGGGGACATTCTTATCCCCAGATCAATTTCACCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_117209.p1 GENE.R_Transcript_117209~~R_Transcript_117209.p1 ORF type:complete len:247 (+),score=45.96,Chloroa_b-bind|PF00504.17|8.9e-46 R_Transcript_117209:83-823(+)
MASNALMSCGINAAVFPSSLSSSKSKFAASVPLANVSCKASSRFTMSAEWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFHELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDILIPRSISP*

Click here to download the sequence:
Link to NCBI Protein BLAST