Transcript Information: R_Transcript_117241.p1


Annotated TAIR IDAT1G30610.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)EMB88, EMB2279
Annotation TypeOrtholog
Chromosome Positionchr1:10846676-10850517 | Forward length=1006
E-Value3.3E-225
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3713119140409
Replicate 21.6062743487878
Replicate 32.8289195064101
Condition 2: 8 Hour
Replicate 12.9971769115754
Replicate 22.9570127899273
Replicate 33.5906464724481
Condition 3: 24 Hour
Replicate 13.0108599642891
Replicate 22.4345149157905
Replicate 33.0618865572927


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_117241.p1 GENE.R_Transcript_117241~~R_Transcript_117241.p1 ORF type:complete len:915 (+),score=189.25,PPR_2|PF13041.2|0.056,PPR_2|PF13041.2|9.3e-06,PPR_2|PF13041.2|4,PPR_2|PF13041.2|0.047,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|1.8e-08,PPR_2|PF13041.2|0.12,PPR|PF01535.16|8.2e+02,PPR|PF01535.16|0.033,PPR|PF01535.16|6e+02,PPR|PF01535.16|0.018,PPR|PF01535.16|9,PPR|PF01535.16|0.038,PPR|PF01535.16|99,PPR|PF01535.16|0.002,PPR|PF01535.16|7.2e-08,PPR|PF01535.16|6.4,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|6.5,PPR_3|PF13812.2|8.5e+03,PPR_3|PF13812.2|0.0059,PPR_3|PF13812.2|45,PPR_3|PF13812.2|24,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|22,PPR_3|PF13812.2|1e+02,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|13,PPR_1|PF12854.3|1,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.07,PPR_1|PF12854.3|7e-06,PPR_1|PF12854.3|1.2e+03 R_Transcript_117241:195-2939(+)
ATGCAAATGGGTTGCGTTTCAATGTCAATTGGGTTCACTCTTCAGAGACCTCCTTTTGGACTTGGTTTGAACCTGAGAAAAAAGAAGCAGGGTGCTTTGATATCTGTGTCGAGAAGACATAGTAAAGTAATAACCAACTCAGTGTCAACTAGCCAAGTGGACAGCAATATTCTTTTAAAGGAGGACACTAAATTCAAGTCGTCATTTGATGAGTATTTGAAGGTGATGGAGTCTATTAGAGCTGAAAGGGACAAGAAGAAAGCTCAAAAAGACAGTCATGGGCATAAAAATGAAGTTGCAGATGTTGCGTTGAGTAAAGATGCTCCACGGACTCAACAACATGGGAAAAACACTAATATTAAATGGTTGAAAGGGTCGGGCTCCAAGGCGAAAGATGACACACGCAGAGTATTGGGTAAAGATGCTCAATGGGCTCAGCAGTTTGGTAAAAGCACTAGTATTAAATCGTTTAAAGCGTCAGGCTCCAAGGAAAATGATGAACCACGCAGAGTGTCAAGTAAAGATGCTCCATGGGCTCGACAATCTGGTAAAAACAGGAATATTAAGTCATTTAAAGGGTCAGACTCCAAGGAAAATGATGAACCACACAGATTATCGAGTAAAGATGCTCCATGCGTTCAACAATGTGGTAAAAGCACTAATATTAAGCCGTTTAAAGGGTCAGGCTCCAAGGAAAATGATGAACCACGCAGAGTATTGAGTAAAGATGCTCCATGGGCTCAACAACATGGGAAAATCGCTAATATTAAGAGGTTTAAAGGACCAGGCTTCAAGGAAAAAGATGCGCCACGTGGAGTTGCAGGGAATGGCAGGTTCGGTGATAGTATTCAACCAAGAAACTCTATAAGAATTGACAGCAAGACGAAGGTTGTCAAATTACAAGACAGTTCAAGTGCAACATTACGTGTAGACTCTACTCCTGCCTCAATCCCTGAGCTTGTTGGTAACAAAAGACTGCCCAAGAGTGAGATAAGGACTGATGATGAGTTGGAGATGAAAAGTTTTCTCTTTGAACAATCTGAACTACTTGGTGATGTTCAAGATGGTCCACGAGTTTCACGGATGGAAATGGAGGAAAGAATTCAGAAGCTTGCAAAAAGTTTAGATGATGCTGATATGGATATGCCAGAATGGATGTTTTCTAAGATAATGCGGAGTGCCCAGATCAGATTTTCTGATCATTCCATGCTGAGGGTTATTCAGATATTGGGTAAGCTTGGAAATTGGAGACGTGTACTGCAAGTAGTTGAGTGGCTTCAAATGCATGAGCGATACAAATCCCTTAAAATCAGATATGTCTACACAGCTGCACTTGATGTACTTGGGAAGGCAAGACGTCCGGTGGAAGCATTAAATTTATTTTGTGCAATGCTGCGACACATGGACTTGTATCCTGACATTGTAGCTTATCATTCAATTGCTGTTACTCTTGGACAAGCTGGTCATATGAAGGAACTTTTTGATGTAATTTATAGCATGAGATGTATGCCTAAGCACTTTAAGGTTGAAGCTCTTGAGAATTGGGATCCACGGCTTGAACCGGATATTGTTGTTTACAATGCTGTCCTAAATGCTTGTGTGAAAAGAAAAGAATGGGAAGGAGCTATTTGGGTTCTGCAGAAACTGGCACAAGTGGGTCAACAGCCATCAAGCACTACATATGGACTTGCTATGGAGGTTATGTTGTCAAGTGGCAAGTACGACCTGGTCCATGAGTTTTTTAGGCAGATGCTGGAGTCTTCTGCGCCGAATGCTTTAGCATATAGAGTTCTTGTTAATACTCATTGGAGAGAAGGTAAACCAGATGAGGCAATTGAAGCTGTTCAGGATATGGAAAGTCGGGGCATAATAGGTTCTGCCAGTCTTTATTATGACCTTGCTAGATGTCACTGTAGTTTCGGAAGGTGTGACGAGGCTTTGATGCAGGTTGACAAGATTTGTAAGGTTGCTAGTAAGCCTCTGGTGGTGACTTACACTGGTTTAATCCAAGCCTGTTTTGACCATGGAAATGTTGATGGTGGGACATCCATATTCAACCATATGCAGAAGTATTGTTCTCCTAATTTGGTGACCTATAACATCATGCTGAAAGCTTATCTTGAACACCGGATGTTTGATGAGGCAAAAGAGCTGTTTCAAAAGATGACACAGAGTGGGCTTGTAGGTAGTAAAGTCAAGGGCAGGATCATACCAGATCTTCATACTTTTAACTTGATGCTGGAAGCATGTATCAGAGAAGAAAAATGGGATGATTTTGAATATGCCTATGAGCAAATGTTGCACCATGCGCATCCTTTCAACACAAAACGCCATCTTTGGATGGTCTTGCAAGCTTCGGGTGCTGGAAAGGTTGAGGTGGTTGAAACAACATGGAGACAATTGATGCAAGCCAACCGTATTCCTCCACCAGCTCTCATCAAAGAAAGGCTCCGGTTGAAAATGGAGAAGGATGATTTAATGTCAGCAGTGTCCACCATCGCTTCCCATCCTCCCAGTCATCAGCAGTCGTTTTCCAGGGAGGCATGGTCGAAGTTATTCAAGAATAATGCACATTGCTTTAAGAAGGATGCTCTTAAACAGTTGATATATGAGGTCGAAACTCGTCTTTCCAAGAGCGAGTCGCCAAACCCCATATATCAGAATTTGCTTCAGTCTTGTATAGAATTTATTAGGCTTGACAAATCATTTGGTGATAGAACAGACTTTATTGAAACTCCTGCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_117241.p1 GENE.R_Transcript_117241~~R_Transcript_117241.p1 ORF type:complete len:915 (+),score=189.25,PPR_2|PF13041.2|0.056,PPR_2|PF13041.2|9.3e-06,PPR_2|PF13041.2|4,PPR_2|PF13041.2|0.047,PPR_2|PF13041.2|6.5e-10,PPR_2|PF13041.2|1.8e-08,PPR_2|PF13041.2|0.12,PPR|PF01535.16|8.2e+02,PPR|PF01535.16|0.033,PPR|PF01535.16|6e+02,PPR|PF01535.16|0.018,PPR|PF01535.16|9,PPR|PF01535.16|0.038,PPR|PF01535.16|99,PPR|PF01535.16|0.002,PPR|PF01535.16|7.2e-08,PPR|PF01535.16|6.4,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|6.5,PPR_3|PF13812.2|8.5e+03,PPR_3|PF13812.2|0.0059,PPR_3|PF13812.2|45,PPR_3|PF13812.2|24,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|22,PPR_3|PF13812.2|1e+02,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|13,PPR_1|PF12854.3|1,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.07,PPR_1|PF12854.3|7e-06,PPR_1|PF12854.3|1.2e+03 R_Transcript_117241:195-2939(+)
MQMGCVSMSIGFTLQRPPFGLGLNLRKKKQGALISVSRRHSKVITNSVSTSQVDSNILLKEDTKFKSSFDEYLKVMESIRAERDKKKAQKDSHGHKNEVADVALSKDAPRTQQHGKNTNIKWLKGSGSKAKDDTRRVLGKDAQWAQQFGKSTSIKSFKASGSKENDEPRRVSSKDAPWARQSGKNRNIKSFKGSDSKENDEPHRLSSKDAPCVQQCGKSTNIKPFKGSGSKENDEPRRVLSKDAPWAQQHGKIANIKRFKGPGFKEKDAPRGVAGNGRFGDSIQPRNSIRIDSKTKVVKLQDSSSATLRVDSTPASIPELVGNKRLPKSEIRTDDELEMKSFLFEQSELLGDVQDGPRVSRMEMEERIQKLAKSLDDADMDMPEWMFSKIMRSAQIRFSDHSMLRVIQILGKLGNWRRVLQVVEWLQMHERYKSLKIRYVYTAALDVLGKARRPVEALNLFCAMLRHMDLYPDIVAYHSIAVTLGQAGHMKELFDVIYSMRCMPKHFKVEALENWDPRLEPDIVVYNAVLNACVKRKEWEGAIWVLQKLAQVGQQPSSTTYGLAMEVMLSSGKYDLVHEFFRQMLESSAPNALAYRVLVNTHWREGKPDEAIEAVQDMESRGIIGSASLYYDLARCHCSFGRCDEALMQVDKICKVASKPLVVTYTGLIQACFDHGNVDGGTSIFNHMQKYCSPNLVTYNIMLKAYLEHRMFDEAKELFQKMTQSGLVGSKVKGRIIPDLHTFNLMLEACIREEKWDDFEYAYEQMLHHAHPFNTKRHLWMVLQASGAGKVEVVETTWRQLMQANRIPPPALIKERLRLKMEKDDLMSAVSTIASHPPSHQQSFSREAWSKLFKNNAHCFKKDALKQLIYEVETRLSKSESPNPIYQNLLQSCIEFIRLDKSFGDRTDFIETPA*

Click here to download the sequence:
Link to NCBI Protein BLAST