Transcript Information: R_Transcript_117251.p1


Annotated TAIR IDAT5G05250.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:1557116-1557835 | Reverse length=239
E-Value6E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.6068725239863
Replicate 24.4004222429367
Replicate 33.4291523347534
Condition 2: 8 Hour
Replicate 12.1993291868783
Replicate 21.205077464495
Replicate 31.1956150708039
Condition 3: 24 Hour
Replicate 11.2372470961038
Replicate 21.0565393480516
Replicate 30.78638459952924


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_117251.p1 GENE.R_Transcript_117251~~R_Transcript_117251.p1 ORF type:5prime_partial len:167 (+),score=28.68 R_Transcript_117251:3-503(+)
GGTGAAGCACCTTTTCTAGTGCATATCTACACAGACAACAATGGGCTTGGATCTTCACCATCACCACCACCACCATCATATTCTGCCAGAAATATGAAATTTGTAATAGAGAAAACGACACAAGAAGCTTGGCCTATAATTAAACAAAGGTGGGAGAGCAGTTACTCTGAAATTCCTCATGGTATTATCTTTGTGGGACAACTTGAGAGCAAAGATAAGCAACAAGAACAACATGACAAAAGTACTAGTACTAGTAGCAAATATTGTACTAGCAATAATCAAATAATGTCATCAAGGACAAAATTGTGGGGTGTGCTTGTTCAAGGAAGAGACCAGCTTCATTTCCCAGCTTGTTATCTTCTCAAGACTTGTCAAGTACAGTGTTGCTTTGGATTCAGCACCCACTTTTGTTTAGCCAAGGTTGATAACTTTGGCATCTGTTGTGGTGATGGTGCTACTACTTTTGATTTTCATTTGAATAAAATGTGGTTGCAAAGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_117251.p1 GENE.R_Transcript_117251~~R_Transcript_117251.p1 ORF type:5prime_partial len:167 (+),score=28.68 R_Transcript_117251:3-503(+)
GEAPFLVHIYTDNNGLGSSPSPPPPSYSARNMKFVIEKTTQEAWPIIKQRWESSYSEIPHGIIFVGQLESKDKQQEQHDKSTSTSSKYCTSNNQIMSSRTKLWGVLVQGRDQLHFPACYLLKTCQVQCCFGFSTHFCLAKVDNFGICCGDGATTFDFHLNKMWLQR*

Click here to download the sequence:
Link to NCBI Protein BLAST