Transcript Information: R_Transcript_117284.p1


Annotated TAIR IDAT5G27260.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:9603943-9604930 | Forward length=303
E-Value2E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.94411867007166
Replicate 20.54300776938702
Replicate 30.9873593791445
Condition 2: 8 Hour
Replicate 10.42217008529733
Replicate 20.96383111384421
Replicate 31.408314617099
Condition 3: 24 Hour
Replicate 12.1770334440064
Replicate 20.57039462648045
Replicate 30.18868710936981


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_117284.p1 GENE.R_Transcript_117284~~R_Transcript_117284.p1 ORF type:5prime_partial len:116 (+),score=21.23,Myb_DNA-bind_3|PF12776.3|1.6e-07 R_Transcript_117284:1-348(+)
CAATGGCCAATTAAAAAATGGTGCTTATTATGTGCAAGATTGGAAGTACTTATGGAGCTGAAATTGCCTGGGTGTGAAAAGAAAGCAAAGCCTCATATCGAATCCAGAGTAAAGCTCCTTAGAAGACAATATGATGCTATTGCAGAGATGTTGAGTCCAAGCGCTAGTGGATTTGGTTGGAACGCTGAGCAAAAGTTTGTTACATGCCCTCAATCCGTTTGGGACGAGTGGATAAAGAGTCATAAAAATGCAGCTGGGCTGAGAAACAAGCCTTTCCCATTTTATGATGACTTGGGAAGAATTTTTGGTAAAGATAGAGGTACAGGAGATGAATCTGGAAATGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_117284.p1 GENE.R_Transcript_117284~~R_Transcript_117284.p1 ORF type:5prime_partial len:116 (+),score=21.23,Myb_DNA-bind_3|PF12776.3|1.6e-07 R_Transcript_117284:1-348(+)
QWPIKKWCLLCARLEVLMELKLPGCEKKAKPHIESRVKLLRRQYDAIAEMLSPSASGFGWNAEQKFVTCPQSVWDEWIKSHKNAAGLRNKPFPFYDDLGRIFGKDRGTGDESGNA*

Click here to download the sequence:
Link to NCBI Protein BLAST