Transcript Information: R_Transcript_117620.p1


Annotated TAIR IDAT5G05360.1
Annotated Gene Nameunknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1588356-1589178 | Forward length=163
E-Value2.8E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.5632402386797
Replicate 24.8553944712689
Replicate 34.8676817391824
Condition 2: 8 Hour
Replicate 16.4275395486519
Replicate 28.6648417134594
Replicate 37.9413296464193
Condition 3: 24 Hour
Replicate 17.7482599393501
Replicate 27.719340611702
Replicate 37.3871003318278


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_117620.p1 GENE.R_Transcript_117620~~R_Transcript_117620.p1 ORF type:complete len:160 (+),score=32.67 R_Transcript_117620:256-735(+)
ATGGGAAAGTCAGTTCCTTCAGCTGCCAGGTTTCAGAACTTTGCAAGAATTATATCATCAGAAAGATTCAACACCCCAAAACAGGCAAAACCCACAACATCAAATAAAGTTTCTCCTTCTTCAAAAATACAGCAGCAATCAGTCGGCCGAGTTGACACGGCCCAACTCGGGCTGAAGATGGACAATTTAGTGAGTCGGAACAACAACCGAGTGCCATTGTCCCATGTTGTGTCGGATTGTGTGAAACGTTGGTTCCAAGATACTCTTAAGGAGGCTAAAGCTGGTGACTCTGCCATGCAACTTTTGGTGGGTCAGATGTATAATAGCGGTTATGGTGTTCGCAAGGATGCTGAAAAGGGTCGCACTTGGATTGCTAGAGCTTCAAAAGGTAGATCTTCTGCTTGGAAAGTCAGCAATAAACAGCCAGGCTACAATGCAAGTGACTCAGAGTCAGAGGATGTAAAGGGTGTCAGGAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_117620.p1 GENE.R_Transcript_117620~~R_Transcript_117620.p1 ORF type:complete len:160 (+),score=32.67 R_Transcript_117620:256-735(+)
MGKSVPSAARFQNFARIISSERFNTPKQAKPTTSNKVSPSSKIQQQSVGRVDTAQLGLKMDNLVSRNNNRVPLSHVVSDCVKRWFQDTLKEAKAGDSAMQLLVGQMYNSGYGVRKDAEKGRTWIARASKGRSSAWKVSNKQPGYNASDSESEDVKGVRS*

Click here to download the sequence:
Link to NCBI Protein BLAST