Transcript Information: R_Transcript_117728.p1


Annotated TAIR IDAT5G39670.1
Annotated Gene NameCalcium-binding EF-hand family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:15883270-15883884 | Forward length=204
E-Value3E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4975733565928
Replicate 23.0174323951566
Replicate 31.0973287471211
Condition 2: 8 Hour
Replicate 10.87973167475132
Replicate 20.80338497633002
Replicate 30.43476911665598
Condition 3: 24 Hour
Replicate 11.3747189956709
Replicate 20.92447192954516
Replicate 30.91744869945079


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_117728.p1 GENE.R_Transcript_117728~~R_Transcript_117728.p1 ORF type:complete len:167 (+),score=23.69,EF-hand_1|PF00036.28|1.7e+02,EF-hand_1|PF00036.28|1.3e-05,EF-hand_1|PF00036.28|7.2e-07,EF-hand_6|PF13405.2|2.3e+02,EF-hand_6|PF13405.2|2.2e-06,EF-hand_6|PF13405.2|0.00083,EF-hand_7|PF13499.2|70,EF-hand_7|PF13499.2|1.5e-09,EF-hand_5|PF13202.2|2.9e+02,EF-hand_5|PF13202.2|4.3e-05,EF-hand_5|PF13202.2|0.0072,EF-hand_8|PF13833.2|0.026,EF-hand_8|PF13833.2|0.01 R_Transcript_117728:100-600(+)
ATGGGGGAAGAGCCTTATTACATGTTTCCACTAATTAGTCACCAAATATTGCGTTCATTCAAAAACCTTACCTCAAATTTACTTCATTTACTCTCACTCGTATTTAGTCAGTCCAATTCTTGTACTACTATAAGTTGGCCGATAAATGATAACATCAGTGTTAGAGATATTAATATGGTAATGACAAGATTGGGAATGTGCTGTCAGTTAATCGAGACCGAAAAAAGGGAATGTGTTGATAGGGATGAGTTTGAGGCGTTGTTTGAAAAGGAAGAGCCAAGTTTGGAGGAAATAAGGCAAGTTTTCAAGGTGTTTGATGGAAACAATGATGGGTTCATTGATGGCTTTGAACTAAGCAGAGTGCTCTGTAAGTTGGGTTTCATCAAGGAAGGTTCAGATATTGAGAAATGTAAGAAGATGATCAGGAGTTTTGATGGAAATGGTGATGGGTTTTTGGATTTTAATGATTTTCTCAAGTTCATGGAGACATGTCTTTGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_117728.p1 GENE.R_Transcript_117728~~R_Transcript_117728.p1 ORF type:complete len:167 (+),score=23.69,EF-hand_1|PF00036.28|1.7e+02,EF-hand_1|PF00036.28|1.3e-05,EF-hand_1|PF00036.28|7.2e-07,EF-hand_6|PF13405.2|2.3e+02,EF-hand_6|PF13405.2|2.2e-06,EF-hand_6|PF13405.2|0.00083,EF-hand_7|PF13499.2|70,EF-hand_7|PF13499.2|1.5e-09,EF-hand_5|PF13202.2|2.9e+02,EF-hand_5|PF13202.2|4.3e-05,EF-hand_5|PF13202.2|0.0072,EF-hand_8|PF13833.2|0.026,EF-hand_8|PF13833.2|0.01 R_Transcript_117728:100-600(+)
MGEEPYYMFPLISHQILRSFKNLTSNLLHLLSLVFSQSNSCTTISWPINDNISVRDINMVMTRLGMCCQLIETEKRECVDRDEFEALFEKEEPSLEEIRQVFKVFDGNNDGFIDGFELSRVLCKLGFIKEGSDIEKCKKMIRSFDGNGDGFLDFNDFLKFMETCLC*

Click here to download the sequence:
Link to NCBI Protein BLAST