Transcript Information: R_Transcript_117729.p1


Annotated TAIR IDAT5G39670.1
Annotated Gene NameCalcium-binding EF-hand family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:15883270-15883884 | Forward length=204
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.96068215551151
Replicate 21.4734245906174
Replicate 31.0716602384165
Condition 2: 8 Hour
Replicate 10.85915315604369
Replicate 21.1768885179571
Replicate 31.2737972365184
Condition 3: 24 Hour
Replicate 13.0878922002175
Replicate 22.4505843211753
Replicate 31.2799827302279


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_117729.p1 GENE.R_Transcript_117729~~R_Transcript_117729.p1 ORF type:complete len:171 (+),score=30.76,EF-hand_1|PF00036.28|4.6e+02,EF-hand_1|PF00036.28|8.6e-06,EF-hand_1|PF00036.28|0.00056,EF-hand_6|PF13405.2|2.5e+02,EF-hand_6|PF13405.2|1.6e-06,EF-hand_6|PF13405.2|0.16,EF-hand_7|PF13499.2|2.4e+02,EF-hand_7|PF13499.2|1.7e-08,EF-hand_8|PF13833.2|0.041,EF-hand_8|PF13833.2|6.8e-05,EF-hand_5|PF13202.2|1.2e+03,EF-hand_5|PF13202.2|1.3e-05,EF-hand_5|PF13202.2|3.3e+02 R_Transcript_117729:85-597(+)
ATGGTGTGGGCTTTGTTTTCACAAGTTAGTGAAGAAACAATGTGTTTGTTCAATTCCAAAACCCTCAACTGGCTTTCATCTTTACTCATCTCCTTCTTTGGTCGATCCAATATGACTAATACTGCTACTGTAATTACAAGGCCGATTAAAAACCATGAGAAATTAGAGGAGATGAGTAATATCAGTGTGAATGAGCTAAATATGGTGATGAGGAGACTGGGAATGATGAGCTGCGAGACAGTTGAGGCAACCAAGGATGATTTCGAGGGTTTGTTTAAGGAAGAAGAGCCAAGTTTGGAGGAAATAAGGGAAGTTTTTAAGGTGTTTGATGGAAATAGAGATGGCTTCATTGATGCTGTTGAGTTAAGCAGAGTGCTCTGTAGGTTGGGTTTCGTCAAAGAAGGTTCAAATGTTGATAAGTGTAAGAAAATGATTCAGGGTTTTGATAGAAATCGTATTGGCTTATTGGATTTTAATGACTTCATTAAGTTTATGGAAAAATGCCTATGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_117729.p1 GENE.R_Transcript_117729~~R_Transcript_117729.p1 ORF type:complete len:171 (+),score=30.76,EF-hand_1|PF00036.28|4.6e+02,EF-hand_1|PF00036.28|8.6e-06,EF-hand_1|PF00036.28|0.00056,EF-hand_6|PF13405.2|2.5e+02,EF-hand_6|PF13405.2|1.6e-06,EF-hand_6|PF13405.2|0.16,EF-hand_7|PF13499.2|2.4e+02,EF-hand_7|PF13499.2|1.7e-08,EF-hand_8|PF13833.2|0.041,EF-hand_8|PF13833.2|6.8e-05,EF-hand_5|PF13202.2|1.2e+03,EF-hand_5|PF13202.2|1.3e-05,EF-hand_5|PF13202.2|3.3e+02 R_Transcript_117729:85-597(+)
MVWALFSQVSEETMCLFNSKTLNWLSSLLISFFGRSNMTNTATVITRPIKNHEKLEEMSNISVNELNMVMRRLGMMSCETVEATKDDFEGLFKEEEPSLEEIREVFKVFDGNRDGFIDAVELSRVLCRLGFVKEGSNVDKCKKMIQGFDRNRIGLLDFNDFIKFMEKCLC*

Click here to download the sequence:
Link to NCBI Protein BLAST