Transcript Information: R_Transcript_117820.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value1E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.45443056318802
Replicate 20.26136473547259
Replicate 30.5108867824868
Condition 2: 8 Hour
Replicate 10.35560384778157
Replicate 20.35953700055848
Replicate 30.76259359971543
Condition 3: 24 Hour
Replicate 10.47630305451668
Replicate 20.56053303197007
Replicate 30.44274921306483


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_117820.p1 GENE.R_Transcript_117820~~R_Transcript_117820.p1 ORF type:complete len:1928 (+),score=212.49,RVT_1|PF00078.23|2.6e-38,DUF4283|PF14111.2|7e-33,RVT_3|PF13456.2|1.5e-22,zf-RVT|PF13966.2|2.1e-21,Exo_endo_phos|PF03372.19|8.9e-06,Exo_endo_phos|PF03372.19|1e+03 R_Transcript_117820:138-5786(+)
ATGGAGGATTCTTCTCCACACCCACTGGAAAATCATACCCTGAAAGAACACCCCCCCATCCCTACCAAACACAACTCATACAAGGCCACACTTCAAGGTGGTGCTTCTCACAACACTGTTCACTCGCCCACACCTCTGTCCTTATTTACAGATGTTGACGATGATGTTTCAGATGATGATCAACCGGACCAAGTGGGCCAGGAGGATCCTACTTGCCCCACCATTTTGCTGTCCAAAGAGGAAAAGCGTCGGCTCCGGCGACCATGGAAACATACCCTCATCATCAAAATGTTTGACAAGAGTATTGGTTATTTTACTTTGCTCAAGAAACTAAAACAAAAATGGTCCCTGAAGGGAGATTTCTCCTTAATCGACCTCACACATGATTTTTATGTGGTTCGGTTTACATCTCTTGAGGATTACAATTTTGTATTGACTCAAGGTCCATGGTTAATTAATGACCATTACCTCACAATTAGAAAGTGGGTGCCAAATTTTGTTGCTGATGACACCCCTATTAGATTTCTTACAGCATGGGTGAGAATTCCACACTTGTCTGTGGAATATTTCGATGCAACTTTCCTTCAGAAGATTGGCAACAGGATTGGAAAAGTCATCAGGGTAGACAACACTACTTCTAAGGCTGAAAGGGGGCAATTTATAAGATTAAGTGTGGAGGTAGATCTCTCTAAACCACTCCTCTCTAAATTTCGGCTTAATGGAAGGGTATGGTGGATTCAATATGAGGGATTAAAACTCATTTGCTTCAAGTGTGGTAAGTCTGGGCATAGAGAAGAGGAATGCGAAGGACACCCTGAAATCCATGCTCCTGCTTTCAGCTCAGTAAATCAGTTGGAGACAGCCCACAGGGACAAGCAGCAAAAAATTCCAAACCCGGCTGAGGAACAACTATATGGGTCATGGATGATACCCAAGAAGCCGGCAAGACGCCGCCAGACAAAGTCAGATCCGCCATTGAAAACACCCTTAGAGAAACCTGCTTCAGCAGGAGTTGGTGCACTTTCAAAGTCTACTGAAATTCAAAAAAAATCAGCGCAATCAAAAAGCGGAGTAAAATCCAATTCCTCCGAGATTTGGAGAGAGAAAATGAAAAAAGGCCCACAAAATACTAATACTGTTGGGGGTTCTCGATTTGAGGCAATAGCTGAATTAGAAGAGCCCGAACATGAAGGATATTTTTTGGGTGACACAGAGGAAGGAAACAATCAAGATAGGGGGAATCAAAATCCAATCAACAAAGACTCTATGTTCACCAACGCTGTTGATTTGGAAATTGAGGCGCATAAAATCAGGGAGGATCACAATGATAATCAACATTCTGTAATTGAGGAAACTGCTGAAAAGTTGGAGGCTACTAAAATTCAGGAAAATCCCATTGCAAAAACTTCCCCTAATGAGTCGATCAATGTTGATAAACTCTTAGAGGAGAATCCAATCACGCGATTGAGTGGCCCGATTTTTCCTCAACTCTCGTTTGACCTCAGCTCACATCAGAAGAATATCTCATCCCCACTTTCTATGCGAAGTCCCAAACCGGTGAACTCAGAAGCCACCCGTAAGATTACTCACCCCAAGAAAATTACTCTCCTCAATAAAGTCAAAATCCCATATGCAAGACTAAGCTCAAGAAGCCCTACCTCTTCCCCACAGCTCTCCTGTATCCCCCCTCATTCTCTCAAGGAAAATCTCGATCCCAACATCACTCTAACCCCTGCAGCCTCCTCAACATTGTTCTCTGGACACACACAATACAATGAGAGGCAGGGCATGCAACCCACTCATATCCATGGTTCCCCCGGAACTCCTAGTATATGCCAGGAAGACAATGGAGAATCCACACACAATACAATGAGAGTGGGCATGCAACCCACTCATATCCTTGGTAAGCCTTGGCTTATAGCGGGAGACTTCAATGACACTATCTCTCTGAACGAGCGTCATGGAGGTGACCACAACATGCAGCGTAGATGCGACAAGTTTAAGGAATGGATTGATAACACTTCCCTCATTGATTTGGGTTTCATTGGTAACCCTTTCACCTGGTCTAGAGGTAACAGTCCCTCCTCCAGGCGTTTTGCTCGCTTGGACCGAGGTTTATGCAATGCTCTCTGGCGAACTCGATTCTCTGAAGCTGCTGTAAAACATCTCCCCCAACTAAGCTCGGACCATTGCCCCCTGCTGATTAGTACTACAGGTTTCACACCTATTGCCACAGGTCCCAAAGCATTCCGATTTCTTGCTAGTTCGATGACCCACGAGAAATTCCAAGAATTTATTAACAATGTCTGGCGCAATGACATTCCCATAGTGGAATTTCTACCTCAACTAAGCTTGGAGCTCAAGGACTGGAATAGGAATGTGTTTGGTAACATTTTCCGCAAGAAGAGACTCTTGTGGGCGAGACTTGAGGGTATTCAAAAATCGATGACTGTTCGTTGCAACAACTATCTTATCCAAAAGGAGGCAGAAATAAAGACCGAATTGGAGCAAACCCTCAACAATGAAGATAACCTGTGGTTCCAAAAATCTCGAAAAGCAGCTCTAAGAGATGGTGATAGAAATACGTCATATTTCCATACCTCCACAATCATTCGGCGCAAACGAAACAGGATCGAAGCACTCAAAGATGATGAAGGAAATTGGGTGCTAGATGGAACAGAAGTAAAGAATATGATGACAAATTATTTTAAAGACCTGTTCACAGCAACTCCGAGGACAGAGCCTCTATTTCAATTCCCTGAGGGGCGGTTCCCTCCTCTCTCTCCAGAATTATTTGACAAGTTATCAAGACAATACACCCAAAGTGACCTTGAAGCAGCCTTATTTGCCATGCACCCAAACAAAGCTCCAGGACCTGATGGATTTCAAGCGCTTTTTTTCCAAAAACAATGGAGTACGGTTCAACATTCATTTTGTGAAACGGCTTTGGGGGTGTTAAGCGGTCGCTCATTACCTCCAGGATTAAATGACACTTATTTGGTACTTATTCCCAAAGGGGAACATCCTTGTAAGGTCACTGACTTCCGCCCTATTGGTTTATGTAATGTGATCTATAAGACCATTACTAAAGCTATAGTGGGACGACTGAAGCCTATACTACCCCTCATGATTTCACCTACTCAGGGAGCCTTTGTCCCAGGCCGACAAATAACCGACAATATTGTTATTGTGCAAGAGGCTATCCACACTATGAGAAGTAAAAAGAGCGGCAAGGGCTTCATGGCGGTCAAGATTGACTTGGCTAAGGCGTATGATCGTTTAAGATGGGATTTCATAGAGGACACCCTTATTGACGTGGGGCTCCCTATCTTGATGCGAGAAATTATTATGCTTTGTGTCACCACCCCCAAGCTACAGGTCTTATGGAATGGGGAACCAACCCAGATATTCCAACCCACACGAGGAATCCGGCAAGGCGATCCTTTGTCGCCGTACCTCTTTGTGATGTGCATGGAAAGATTGAGCCATCTCATTGAGGAAGCCTTAGCCACACACACTTGGAAGCCTATCCACTGCAGCAGAAATGGACCACCTCTGTCCCACTTGTTCTTTGCCGACGACATAGTGCTATTTGCCGAGGCAAACATAGAACAAGCGGTCATAATGAAGCAATGCTTACAGCGTTTCTGTGCAGCTTCTGGGGAGTTGGTCTCTTTACCCAAGTCTCGAATATATTTTTCCTCCAATGTCTCGACGGAAACCAGCTCCACAATCTGTGATACCTTGGGCATAGCGGCAACAGAGGATCTTGGATTCTACTTGGGTATGCCTACTCTTCATAGTCGCGTCACAAAGAGTACTTTCCAGCACATTATTGATAAATTCGATAAGAAACTTAGTGGTTGGAAGGCCCACTGCTTATCCTTAGCGGGACGAATTACTCTAACAAAATCTGTTCTATCTACTCTAGCCTACTATTCAATGCAAACAGCAAAGCTTCCGCGATCAGTGTGTGATGAAGTGGATCGCAAGATGCGGAAATTTCTTTGGGGTGGCAGTGGTGATTCTCATAAAATACACCTTGTGTCATGGGAGAAACTACAACAGGATAGAAAGCATGGGGGACTAGGTCTCCGCTCAGCCAGGCAATCAAATGCTGCTTTTTTGTCAAAACTCGGGTGGCGTATGCTAACTGAACCGGGCACTTTATGGTCTCAAGTTCTGAGGGCGAAATATTGTCATGGTAGATGCGACCTCGACATGTTTCGTGCCCGACCCAATACTTCCAATGTGTGGAAAGGAATTACCCAGAATGCTCATATTATTCGGCAGGGCGCAACCATGGCCGTAGGGAATGGCAAGAGAACCTTCTTTTGGGATCATCGGTGGGCACTCGACGTCCCTTTAGCCCAACTAGCTACTCATGCGATCCCCTTAGAAGAACAAGACAAAACAGTTGAAGACTATTGGAATGAATCGGGAGGTTGGGAGTGGGATGCGTTTTCAGACTATTTACCAAAAACAACGCTTCAACATTTAGAATCTTTTCATTTGGTTCGCGACGAAGAAGCGGAGGATACTCTCTATTGGGGGCCAACTAGTGATGGGAAATTTTCTGTCAAATCAGCTTTCCAAATCCTTAGGCAATCTACGCCCACACCGAATGAAAAACAATGGGAATTGGCTTGGAGAGTTAAGGTTTCCCAACGCATTAAAATGTTCATCTGGTTAGTTCTTCATGATAGAATTCTCACGAATGCCAATCGCAATAGGCGAGGAATAACCGATGACCCTAGATGCAAATCTTGTGGAGCTGAGGAAGAAAACATAAGTCATGTTCTGCGGGACTGTCATTATGCGAAGACAATCTGGAATGAAATGGGTATGCCCTCTTCAAACTCCCTATTTTGGACCACTCCGGTAAATGAATGGTTAGTCGAAAATCTAGATTGCTCAGGAGTACAGGATCATCCTGACGGCCCAACAAACTTTGCTATCACCATCTGGTGGCTTTGGAAATGGCGGAATTGTCGGGTCTTCCACAGGGAAGAGGAACTTCCTCATCACCCTGTCTTGTTCTTGATACAAAAATTTAAGGAAATGAAGGAAGCACTTGAACAAGAAGACCTCCTGCAGGGTCTTCCAGCTAAGAAAAGACAGGTGGCCCAAGTGTCCTGGCATGCTCCCCCTGATGGCTGGTACTCTTTAAATACTGATGGGGCATCAAGAGGAAATCCAGGACCTGCTGCCGGAGGCGGAATACTGCGCAACAGCAGAGGTGAGATGTTGAGGGCTTTTGCAGCAAGGTATGGAGTATGTTCTATCACTCGAGCTGAAGCCCTGGCTATATGGCAAGGGTTGCGTATGGCAAAAGAAGGTGGTTTTCGAAGACTTGTTATCCAATCTGACTCACAGGTCGTCCTCAACATGCTGAACTCTGATGATCCTTGTAGCACTGCACTACAACACATTATCCACCAATGCAGAGCCATGATTGTCAATGAAGAGTGGGAAATAAGGCTCCAACATTGCTATCGTGAAGCCAATCGTGCCGCAGATTACCTTGCCAACATGGGGGTAGACCAAGATACTGATTTACAATTCCTCTCGCAACCAACCTCGGAGCTCCATCGCATATTGACTGAAGATTTGAGGGGTGTGGCTTGGCTTAGATTGATTAGTACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_117820.p1 GENE.R_Transcript_117820~~R_Transcript_117820.p1 ORF type:complete len:1928 (+),score=212.49,RVT_1|PF00078.23|2.6e-38,DUF4283|PF14111.2|7e-33,RVT_3|PF13456.2|1.5e-22,zf-RVT|PF13966.2|2.1e-21,Exo_endo_phos|PF03372.19|8.9e-06,Exo_endo_phos|PF03372.19|1e+03 R_Transcript_117820:138-5786(+)
MEDSSPHPLENHTLKEHPPIPTKHNSYKATLQGGASHNTVHSPTPLSLFTDVDDDVSDDDQPDQVGQEDPTCPTILLSKEEKRRLRRPWKHTLIIKMFDKSIGYFTLLKKLKQKWSLKGDFSLIDLTHDFYVVRFTSLEDYNFVLTQGPWLINDHYLTIRKWVPNFVADDTPIRFLTAWVRIPHLSVEYFDATFLQKIGNRIGKVIRVDNTTSKAERGQFIRLSVEVDLSKPLLSKFRLNGRVWWIQYEGLKLICFKCGKSGHREEECEGHPEIHAPAFSSVNQLETAHRDKQQKIPNPAEEQLYGSWMIPKKPARRRQTKSDPPLKTPLEKPASAGVGALSKSTEIQKKSAQSKSGVKSNSSEIWREKMKKGPQNTNTVGGSRFEAIAELEEPEHEGYFLGDTEEGNNQDRGNQNPINKDSMFTNAVDLEIEAHKIREDHNDNQHSVIEETAEKLEATKIQENPIAKTSPNESINVDKLLEENPITRLSGPIFPQLSFDLSSHQKNISSPLSMRSPKPVNSEATRKITHPKKITLLNKVKIPYARLSSRSPTSSPQLSCIPPHSLKENLDPNITLTPAASSTLFSGHTQYNERQGMQPTHIHGSPGTPSICQEDNGESTHNTMRVGMQPTHILGKPWLIAGDFNDTISLNERHGGDHNMQRRCDKFKEWIDNTSLIDLGFIGNPFTWSRGNSPSSRRFARLDRGLCNALWRTRFSEAAVKHLPQLSSDHCPLLISTTGFTPIATGPKAFRFLASSMTHEKFQEFINNVWRNDIPIVEFLPQLSLELKDWNRNVFGNIFRKKRLLWARLEGIQKSMTVRCNNYLIQKEAEIKTELEQTLNNEDNLWFQKSRKAALRDGDRNTSYFHTSTIIRRKRNRIEALKDDEGNWVLDGTEVKNMMTNYFKDLFTATPRTEPLFQFPEGRFPPLSPELFDKLSRQYTQSDLEAALFAMHPNKAPGPDGFQALFFQKQWSTVQHSFCETALGVLSGRSLPPGLNDTYLVLIPKGEHPCKVTDFRPIGLCNVIYKTITKAIVGRLKPILPLMISPTQGAFVPGRQITDNIVIVQEAIHTMRSKKSGKGFMAVKIDLAKAYDRLRWDFIEDTLIDVGLPILMREIIMLCVTTPKLQVLWNGEPTQIFQPTRGIRQGDPLSPYLFVMCMERLSHLIEEALATHTWKPIHCSRNGPPLSHLFFADDIVLFAEANIEQAVIMKQCLQRFCAASGELVSLPKSRIYFSSNVSTETSSTICDTLGIAATEDLGFYLGMPTLHSRVTKSTFQHIIDKFDKKLSGWKAHCLSLAGRITLTKSVLSTLAYYSMQTAKLPRSVCDEVDRKMRKFLWGGSGDSHKIHLVSWEKLQQDRKHGGLGLRSARQSNAAFLSKLGWRMLTEPGTLWSQVLRAKYCHGRCDLDMFRARPNTSNVWKGITQNAHIIRQGATMAVGNGKRTFFWDHRWALDVPLAQLATHAIPLEEQDKTVEDYWNESGGWEWDAFSDYLPKTTLQHLESFHLVRDEEAEDTLYWGPTSDGKFSVKSAFQILRQSTPTPNEKQWELAWRVKVSQRIKMFIWLVLHDRILTNANRNRRGITDDPRCKSCGAEEENISHVLRDCHYAKTIWNEMGMPSSNSLFWTTPVNEWLVENLDCSGVQDHPDGPTNFAITIWWLWKWRNCRVFHREEELPHHPVLFLIQKFKEMKEALEQEDLLQGLPAKKRQVAQVSWHAPPDGWYSLNTDGASRGNPGPAAGGGILRNSRGEMLRAFAARYGVCSITRAEALAIWQGLRMAKEGGFRRLVIQSDSQVVLNMLNSDDPCSTALQHIIHQCRAMIVNEEWEIRLQHCYREANRAADYLANMGVDQDTDLQFLSQPTSELHRILTEDLRGVAWLRLIST*

Click here to download the sequence:
Link to NCBI Protein BLAST