Transcript Information: R_Transcript_118460.p1


Annotated TAIR IDAT1G12700.1
Annotated Gene NameATP binding;nucleic acid binding;helicases
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:4323722-4326227 | Reverse length=735
E-Value6E-120
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0636595242019
Replicate 21.1870699882006
Replicate 31.4974369099958
Condition 2: 8 Hour
Replicate 12.076539783512
Replicate 21.8963292020793
Replicate 32.7259485914009
Condition 3: 24 Hour
Replicate 13.5694117244487
Replicate 22.4159470869537
Replicate 31.7015176788401


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_118460.p1 GENE.R_Transcript_118460~~R_Transcript_118460.p1 ORF type:3prime_partial len:566 (+),score=90.41,PPR_2|PF13041.2|7.8e+03,PPR_2|PF13041.2|1.1e-08,PPR_2|PF13041.2|8.5e-11,PPR_2|PF13041.2|7.3e-21,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|3.1e-16,PPR_2|PF13041.2|2.5e-19,PPR_2|PF13041.2|8.6e-22,PPR_2|PF13041.2|4.6e-18,PPR_2|PF13041.2|2.3e-17,PPR_2|PF13041.2|4.9e-16,PPR_2|PF13041.2|3e-07,PPR_1|PF12854.3|2.4e-07,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|2.7e-05,PPR_1|PF12854.3|2.9e-10,PPR_1|PF12854.3|3.4e-10,PPR_1|PF12854.3|6.5e-10,PPR_1|PF12854.3|5.2e-11,PPR_1|PF12854.3|1.6e-16,PPR_1|PF12854.3|5.7e-12,PPR_1|PF12854.3|1.6e-13,PPR_1|PF12854.3|3.7e-08,PPR_1|PF12854.3|8.7e-13,PPR|PF01535.16|0.00013,PPR|PF01535.16|1.9,PPR|PF01535.16|0.0029,PPR|PF01535.16|3.8e-08,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|4.2e-08,PPR|PF01535.16|5.3e-08,PPR|PF01535.16|1.5e-10,PPR|PF01535.16|7.1e-07,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|5e-06,PPR|PF01535.16|3.6e-08,PPR_3|PF13812.2|6.6e+03,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|23,PPR_3|PF13812.2|8.5,PPR_3|PF13812.2|0.00032,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|0.0077,PPR_3|PF13812.2|1.9e-05,PPR_3|PF13812.2|3e-06,PPR_3|PF13812.2|9e-07,PPR_3|PF13812.2|0.0072,PPR_3|PF13812.2|0.0009,PPR_3|PF13812.2|0.00054,MRP-S27|PF10037.5|3.7,MRP-S27|PF10037.5|8.7,MRP-S27|PF10037.5|0.0072,MRP-S27|PF10037.5|2.7e+02,TPR_19|PF14559.2|1.6e+03,TPR_19|PF14559.2|4.8e+03,TPR_19|PF14559.2|0.49,TPR_19|PF14559.2|2.3e+03,TPR_19|PF14559.2|5.3e+02,TPR_19|PF14559.2|3.7e+02,TPR_19|PF14559.2|3.3e+02,TPR_19|PF14559.2|5.3e+02 R_Transcript_118460:1479-3173(+)
ATGAGGTTGAGCGGAGCTCGAGGTGGGGCGCCATTGTTGTCTAAATCTTCGTTTTCTTCACACTGTAACATTTATCTTCCTTCTCTCTCCCCTTTTCATATTTTTTTTGATTACTTTCATGTTCAATTTCAATATTGTGGCAGATATTATTGTTATTCAACCGCTGCACAATCGAATGTTGGAGACCCTCAACTGTTCCTCAATTCTGTTAGGGAAAAATGCAATCTAGGGTTTCATGACCTCGATTCTCCTGTTCTTCTTTTCAATCAAATGACTTCTTTGCGTCCCCTGCCTTCCATTATTGATTTCAATCGCCTCTTTTCTTCCATTCTCAAGACCAAGAGACCCCCGATGGAACTTGATGACAAATACCACCTTGTCATTTCTCTCTTCAAACACCTTGGCTTGCCCGGTAATGCCTGTAATGGTAAACGTGTCCGCCCCAATCTTTATTCCTTTAACATCCTGATCAATTGTTACTGCCGCTTGGGCCGCCTTGATTTGGGGTTTTCCCTTTTGGGTACTCTCTTCAAGCTTGGGTTTCAGCCTAATTCTTTCGTCTTCAATACCTTACTTGATGGCTTCATCCACCTTCATCAGTTCCCCAAAGCTCTCTCCTTTTTGGATACGCTTGTTTACCTAGGCTTCCAACCTGACAATGTCACCTATGGTATATTGTTTAAAGGCTTCTGTCGAGTTGGTAACAATGTTGGCGCTCTCTCCTTGCTTCGGAAGGTTGAATCTTCTGGCCTTTGTCAGCCTAACATTGTCATTTACAATACTCTCCTTGACAGCTTGTGCAAAGACAGGCTAGTAACCGAGGCCTTGACTCTCTTTTCTGAAATGAAAAACAAGGGCATCTCCCCTAATGTTGTCACCTACAATTCCTTGCTTCGTGGTCTTTGTAGTTTAGGCTGTTGGGATGAGGCTAAGGAAGCATTGACCGAGATGTTAGAGAGCAATGTAGCACCAAATGTCCGAACCTATAGCACGCTTATAGACATGTATTGTAAAGAGGGGGAGGTTGAGGAAGCAAAATCCATACTTGTCTTGATGATTAAGAGGGGTGAGAGGCCTGACATTGTTACCTACAATTCCCTACTGGATGGATACTGTTTGCGCGGCCAAATGGATAAAGCATCTCAGTTGATGGATCTGATGGCAAGACATGGGTGCCAACCTGATGTTGTCACCTTCACCACAGTGATCAATGGCTATTGCAAGAGTAAAAACCTCGATGAAGCTTTCAAGTTGTTCAAGGAAATGCCTGTCAAAGGATTGAGCCCCAATGTAAATACATATAGCACTCTTCTAGATGGCTTGTGCAAGGGTAACAGGGTCCAACTTGCACTTCAACTCTTCAAAGAGATGCAAGCTCAGGGGATAACTCCAGATGTTGTCACCTTTAATACTTTGTTGGATGGCTTATGTAAGGATGGACAGCTTGATGAGGCTGTAACAATGTCTAAGGAGATGGAGAGGAATGGAGTGGTAAAGAACCTTGTGAGCTATAGTGTGTTAATTGATGGTATGTGTGAAAAGGGGAGATGGAAAGAGGCATCGGAAGTCTTCTCCAAGCTGATGGCCAAGGGATTGCAGCCAAATTGTATAACGTACACCGCAATGATAAAAGGACTTTGCAAGAAGGGGCTCTTAGATCAAGCTGATGAATTATTGAAGAAGATGGAGGAGCAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_118460.p1 GENE.R_Transcript_118460~~R_Transcript_118460.p1 ORF type:3prime_partial len:566 (+),score=90.41,PPR_2|PF13041.2|7.8e+03,PPR_2|PF13041.2|1.1e-08,PPR_2|PF13041.2|8.5e-11,PPR_2|PF13041.2|7.3e-21,PPR_2|PF13041.2|1.2e-16,PPR_2|PF13041.2|3.1e-16,PPR_2|PF13041.2|2.5e-19,PPR_2|PF13041.2|8.6e-22,PPR_2|PF13041.2|4.6e-18,PPR_2|PF13041.2|2.3e-17,PPR_2|PF13041.2|4.9e-16,PPR_2|PF13041.2|3e-07,PPR_1|PF12854.3|2.4e-07,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|2.7e-05,PPR_1|PF12854.3|2.9e-10,PPR_1|PF12854.3|3.4e-10,PPR_1|PF12854.3|6.5e-10,PPR_1|PF12854.3|5.2e-11,PPR_1|PF12854.3|1.6e-16,PPR_1|PF12854.3|5.7e-12,PPR_1|PF12854.3|1.6e-13,PPR_1|PF12854.3|3.7e-08,PPR_1|PF12854.3|8.7e-13,PPR|PF01535.16|0.00013,PPR|PF01535.16|1.9,PPR|PF01535.16|0.0029,PPR|PF01535.16|3.8e-08,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|4.2e-08,PPR|PF01535.16|5.3e-08,PPR|PF01535.16|1.5e-10,PPR|PF01535.16|7.1e-07,PPR|PF01535.16|1.7e-07,PPR|PF01535.16|5e-06,PPR|PF01535.16|3.6e-08,PPR_3|PF13812.2|6.6e+03,PPR_3|PF13812.2|0.21,PPR_3|PF13812.2|23,PPR_3|PF13812.2|8.5,PPR_3|PF13812.2|0.00032,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|0.0077,PPR_3|PF13812.2|1.9e-05,PPR_3|PF13812.2|3e-06,PPR_3|PF13812.2|9e-07,PPR_3|PF13812.2|0.0072,PPR_3|PF13812.2|0.0009,PPR_3|PF13812.2|0.00054,MRP-S27|PF10037.5|3.7,MRP-S27|PF10037.5|8.7,MRP-S27|PF10037.5|0.0072,MRP-S27|PF10037.5|2.7e+02,TPR_19|PF14559.2|1.6e+03,TPR_19|PF14559.2|4.8e+03,TPR_19|PF14559.2|0.49,TPR_19|PF14559.2|2.3e+03,TPR_19|PF14559.2|5.3e+02,TPR_19|PF14559.2|3.7e+02,TPR_19|PF14559.2|3.3e+02,TPR_19|PF14559.2|5.3e+02 R_Transcript_118460:1479-3173(+)
MRLSGARGGAPLLSKSSFSSHCNIYLPSLSPFHIFFDYFHVQFQYCGRYYCYSTAAQSNVGDPQLFLNSVREKCNLGFHDLDSPVLLFNQMTSLRPLPSIIDFNRLFSSILKTKRPPMELDDKYHLVISLFKHLGLPGNACNGKRVRPNLYSFNILINCYCRLGRLDLGFSLLGTLFKLGFQPNSFVFNTLLDGFIHLHQFPKALSFLDTLVYLGFQPDNVTYGILFKGFCRVGNNVGALSLLRKVESSGLCQPNIVIYNTLLDSLCKDRLVTEALTLFSEMKNKGISPNVVTYNSLLRGLCSLGCWDEAKEALTEMLESNVAPNVRTYSTLIDMYCKEGEVEEAKSILVLMIKRGERPDIVTYNSLLDGYCLRGQMDKASQLMDLMARHGCQPDVVTFTTVINGYCKSKNLDEAFKLFKEMPVKGLSPNVNTYSTLLDGLCKGNRVQLALQLFKEMQAQGITPDVVTFNTLLDGLCKDGQLDEAVTMSKEMERNGVVKNLVSYSVLIDGMCEKGRWKEASEVFSKLMAKGLQPNCITYTAMIKGLCKKGLLDQADELLKKMEEH

Click here to download the sequence:
Link to NCBI Protein BLAST