Transcript Information: R_Transcript_118552.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-19
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 21.0935573133489
Replicate 30.11930592497996
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.094539638647849
Condition 3: 24 Hour
Replicate 10.23914382528858
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_118552.p1 GENE.R_Transcript_118552~~R_Transcript_118552.p1 ORF type:complete len:192 (-),score=20.72,UBN2_3|PF14244.2|4.4e-45,Retrotrans_gag|PF03732.13|2.6e-10 R_Transcript_118552:13-588(-)
ATGTCTTCTTCAACAACTTCTGAGACTAATTCCACTTCAATTGATGTTCATAGTGAACTATACATCCATCATTCTGATATTTCTAATTCTTTTTTACTTGCTACTCAAAAATTAAATGGTGACAACTATGGTGAATGGAAAAGATCAGCTGAAATCACATTGAGTGCGAAGAATAAACTCGGTTTTGTGACTGGAACATGCACTAAACGAACTGATTCTTCTTCTACCTTGAGCTATTGGGAACGTTGTAACAATATGGTGATATCTTGGATTCTTCATTCAGTTGAACCTGATATTGCTCGGAGCATACTTTACTACAACACAGCTGCTGAGATATGGACTGAATTGGAAGAGAGGTATGGACAATCCAATGCTCCACGTAAATATCAGGTGCATAATCATATTGCTTCTATTAATCAGGGCAATAAATCAGTGAGTGAATTTTACACTGAATTGAAAACCTCATGGGATGAATACATGTCCTTGATTAGTCTGCCTATATGCACATGTGGCACTGGCAGGGTTTTAACTATCGGCCGATACGTATCGTATCGGCCGATCCATCTGGGTTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_118552.p1 GENE.R_Transcript_118552~~R_Transcript_118552.p1 ORF type:complete len:192 (-),score=20.72,UBN2_3|PF14244.2|4.4e-45,Retrotrans_gag|PF03732.13|2.6e-10 R_Transcript_118552:13-588(-)
MSSSTTSETNSTSIDVHSELYIHHSDISNSFLLATQKLNGDNYGEWKRSAEITLSAKNKLGFVTGTCTKRTDSSSTLSYWERCNNMVISWILHSVEPDIARSILYYNTAAEIWTELEERYGQSNAPRKYQVHNHIASINQGNKSVSEFYTELKTSWDEYMSLISLPICTCGTGRVLTIGRYVSYRPIHLGF*

Click here to download the sequence:
Link to NCBI Protein BLAST