Transcript Information: R_Transcript_118801.p1


Annotated TAIR IDAT5G54148.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54150.1); Has 104 Blast hits to 102 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21976465-21977032 | Reverse length=116
E-Value5E-06
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1267259848592
Replicate 20.2592135853864
Replicate 31.5553957627017
Condition 2: 8 Hour
Replicate 11.6626204593809
Replicate 21.1042410785771
Replicate 30.44818791655277
Condition 3: 24 Hour
Replicate 10.99200401601191
Replicate 21.3614357339862
Replicate 31.3510928819072


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_118801.p1 GENE.R_Transcript_118801~~R_Transcript_118801.p1 ORF type:internal len:162 (+),score=47.69,zf-CCHC|PF00098.19|0.00093,zf-CCHC|PF00098.19|0.00021,zf-CCHC|PF00098.19|1.6e+04 R_Transcript_118801:2-484(+)
GATGTGATTCGGTATGGGCCCCAGTGCTATTCCTGTTCTAGGTTTGGCCATTATGCTAACCGTTGCCCTCAAAGAAGGAATCTTGATTCTGACAAGGGTTATAGGTGTGGGTTAACAGGTCATTATGCTAGGGATTGCAAGTCACCTCATTTCATGACTTCTGGGTTTTTGAATCTTAATACTAGTAGTAGCATTAATGGTGATGGAAAAAAAGGGTCTTTTGTTTGTGTGAAAAGGAGGGAGGATGTTAAGAAAGTTGAGCAGGTTGAGGATTGTTTTATTCTTGACTTTGATCCTTATGATACTCTCAGTGATGATGACGACGACGATGAGGAGGACGATGATGATGATGATGATTGTAGAGAAATAGGGTCAATAGTGTGTGTAAAGAGAATGGAAGATGTGAAGAAAGTAGAGGAAGTGGAGGACTGTTTCATATTGGAGTTTGATCCTAGTGACCCTGTGAAATTTTCTAACTTGTCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_118801.p1 GENE.R_Transcript_118801~~R_Transcript_118801.p1 ORF type:internal len:162 (+),score=47.69,zf-CCHC|PF00098.19|0.00093,zf-CCHC|PF00098.19|0.00021,zf-CCHC|PF00098.19|1.6e+04 R_Transcript_118801:2-484(+)
DVIRYGPQCYSCSRFGHYANRCPQRRNLDSDKGYRCGLTGHYARDCKSPHFMTSGFLNLNTSSSINGDGKKGSFVCVKRREDVKKVEQVEDCFILDFDPYDTLSDDDDDDEEDDDDDDDCREIGSIVCVKRMEDVKKVEEVEDCFILEFDPSDPVKFSNLS

Click here to download the sequence:
Link to NCBI Protein BLAST