Transcript Information: R_Transcript_11916.p1


Annotated TAIR IDAT1G47820.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:17612114-17612404 | Forward length=96
E-Value1E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.916581952515
Replicate 214.949365896404
Replicate 314.660312061538
Condition 2: 8 Hour
Replicate 111.753215174678
Replicate 213.77430321417
Replicate 313.650011186531
Condition 3: 24 Hour
Replicate 115.060321541374
Replicate 215.174018116717
Replicate 312.607317899653


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_11916.p1 GENE.R_Transcript_11916~~R_Transcript_11916.p1 ORF type:5prime_partial len:125 (+),score=26.94 R_Transcript_11916:2-376(+)
AAAAAAAAAAAAAAAAAAAAAAGAGTATTAACTACAAAGCACTCTATCAAGAGAGAGACAGAGCTTCCCAAACACATCGAACAGAAAAGCTTGGAAGCTGAGATTTTCATGGAAACTCAACCTCAGAATGCTTCTTTGCCTGCAAGCCAGGTCAAGGCCTCGCTACATCTTGGGTCTGAGACATGCACAGTACATGGCAGTAAAGGTATCCTGTCAGAGCAGTTGGTTTCAATGAAAGAAGAATGCATGATCATATTGAAGGACTATATTACCAAGCACAATGCTCCGGCTGATGTTCCTGATGAACCACTTGAAGGCTCTTCAGGAGATGAAGATGAAGTCGTAGACAAGCCCAAATCAAAGAAAAGAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_11916.p1 GENE.R_Transcript_11916~~R_Transcript_11916.p1 ORF type:5prime_partial len:125 (+),score=26.94 R_Transcript_11916:2-376(+)
KKKKKKKRVLTTKHSIKRETELPKHIEQKSLEAEIFMETQPQNASLPASQVKASLHLGSETCTVHGSKGILSEQLVSMKEECMIILKDYITKHNAPADVPDEPLEGSSGDEDEVVDKPKSKKRK*

Click here to download the sequence:
Link to NCBI Protein BLAST