Transcript Information: R_Transcript_119169.p1


Annotated TAIR IDAT5G48600.2
Annotated Gene Namestructural maintenance of chromosome 3
Annotated Gene Symbol(s)SMC3
Annotation TypeOrtholog
Chromosome Positionchr5:19701908-19709091 | Forward length=1244
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.369407276599
Replicate 214.516580909833
Replicate 316.87864875506
Condition 2: 8 Hour
Replicate 112.223406265531
Replicate 211.465747227976
Replicate 316.429089357368
Condition 3: 24 Hour
Replicate 121.859347551737
Replicate 217.781392933312
Replicate 322.568422775246


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_119169.p1 GENE.R_Transcript_119169~~R_Transcript_119169.p1 ORF type:complete len:1254 (+),score=359.93,SMC_N|PF02463.15|2.2e-75,SMC_hinge|PF06470.9|1.4e+03,SMC_hinge|PF06470.9|3.5e+03,SMC_hinge|PF06470.9|1.4e-23,AAA_21|PF13304.2|1.5e-07,AAA_21|PF13304.2|1.3e+04,AAA_21|PF13304.2|5.4e+03,AAA_21|PF13304.2|1.6e-05,AAA_29|PF13555.2|9.2e-06 R_Transcript_119169:211-3972(+)
ATGGGGAAAGAGATCGAAATGGAAATGGAGGATAATTCAACAACAACCACTTCAACACCTTCAGAGTCAAAAAATCACAGCAATTCTGGAACTCCCAGACTCTTCATTAAAGAGATGGTCATGAGAAACTTCAAATCTTATGCTGGTGAACAACGTGTTGGCCCTTTTCACAAGAGTTTTTCGGCAGTTGTGGGGCCCAATGGGAGCGGAAAGAGCAACGTCATCGATGCCATGCTCTTTGTATTTGGCAAACGAGCTAAGCAGATGAGGTTGAACAAAGTCTCAGAGCTTATTCACAACTCCACTAATCACCAGAATTTAGACAGTGCTGGTGTGTCGGTCCATTTTCAAGAAATAATTGATCTGGATGATGGGGAGTATGAAGTTGTTCCTGGTAGCGAGTTTGTTATAGCAAGGGTTGCGTTTCGTGACAACTCTTCAAAGTATTACATTAACAATAAAGCAAGTAATTTTACTCAGGTTACCACGAAATTGAAGGGGAAAGGTGTGGACTTGGATAATAACCGGTTTTTAATCCTTCAGGGGGAGGTTGAACAAATTTCATTAATGAAGCCAAAAGCTCAAGGACCTCATGATGAAGGTTTTCTTGAATACCTTGAAGATATAATTGGGACTAACAAATACGTAGAGAAGATAGAGGACTCCAGGAAGCAGTTGGAGTCTCTGAATGAGAAGAGATCTGGAGTTGTGCAAATGGTCAAGCTAGCAGAGAAAGAAAGAGATAGCTTAGAAGATGTGAAAAATGAGGCTGAAGGTTATATGCTGAAGGAACTGTCACTGTTGAAATGGCAAGAGAAAGCTACAAAACTTGCTGCTGAAGACAACAATGTGAAAATATTGGAGTTGCAAAGTAACTTATCCAGCTTGGAAGAAAATCTGAAGTCCAAAAGAGATGAGATTCGGGAAAATACTTCTAATATGAAGGAGATTGAAGCTTTGCACAACAAGTATCTTAAAAGACAAGAGGAACTTGATAATGACCTCAGGGCCTGTAAAGAGGAGTTCAAGGAGTTTGAAAGACAGGATGTGAAACACCGGGAAGATTTGAAGCATATCAAACAAAAGATCAAAAAACTGGAGGATAAAATTGAGAAGGATTTCTCCAAGATTGACAACTTCACAAAAGATAGTGAAAATGCTTCAATAATGATTCCGAAACTGGAAGGAGAGATCCCTGAACTGCAAAAGCGCTTATTTGACGAAGATAAACTTTTAGAAGAAATCAAGGAGAATTCTAAAGGTGAAACTGAGAGGTTCCGAGCTGAGCTGGCCAATGTTCGAGCTGAATTGGATCCTTGGGAGAATCAACAGATGGACCACAAGGGGAAACTTGAAGTTGCATCCACTGAACAGAAGCTCTTAAGTGAAAAGCATGAAGATGCTCGTAAAGCTTTTGAGGATGCACAAAAGCAGATAAATGATATAGCTGAAAAGATAAAATCCAAAACCTCAACTATCACAAGCATCCAAAACGAATTGGAGAAAAACAAGCGTGCAGCTTCTGATGCTCGTAAAGTAGAGGAAGAATGCGTCAAGGAACAAGAAGCTCTCATTCCCCTTGAGCAAGCTGCAAGGCAAAAGGTCGCTGAGCTTGTATCCGTAAGGGAGTCCGAAAAAAGCCAAGGATCTGTCCTAAAAGAGATTTTACAAGCAAAGGAAACAAATCAGATCAATGGAATTTATGGACGAATGGGTGATTTGGGTGCTATAGATGCTAAATATGATGTCGCCATATCAACAGCATGCCCTGGACTTGATTATATTCTAGTAGAGACTGCTGAAGCAGCACAGAAATGTGTAGACTTGCTTCGACAAAAGAATCTAGGTGTTGCCACTTTCATGATACTGGAAAAACAAGAAAGGCATCGTGATCTGCTGAAGAAGAAAGTAAATACACCAGAGGGGGTTCCTCGCCTTTTTGATTTGATCAAGGTGAAGGACGAAAGACTAAAGGTCGCTTTCTATGAGTTAATGAGGAACACTGTAGTAGCTAAGGACCTTGACCAGGCAGCACGTATAGCATACGGTGGAAACAAAGAATTCAGACGAGTGGTTACATTAGATGGTGCTCTCTTCGAAAAATCCGGGACAATGAGTGGCGGGGGTAGTAAACCACGAGGAGGGAAAATGGGGACATCTATTTTTGCTGACACTGTTTCTAGAGAAGCTGTGGCTAATGCTGAAAGGGATCTTGCTACAATGGTTGATAAACTAGATGCAATTCGGAGAAGAATTTCCGATTCTGTTCAGAGTTACCAATCTCTAGAGAAAGCTATACAAAACTTAGAGATGGAATTGGCCAAGAGTCAGAAAGAGATTGACAGTCTGAATACGCAACATGATTATCTGAAGAATCAGCTCGATTCTCTAAAATCTGCTGCAAAACCAAGGAAGGAGGAGGTGAGCAGGTTGGAGGAGCTCCAGAAAATTATAGCTGATGAAGAAAAGCAGATTGCTATACTGTTACAGGGATCTAAGCAACTGAAGGAGAAGGCATCAGATCTTCAGAGTAAAATAGAAAATGCTGGTGGTGAAAGACTTAGAAACCAAAAGGGAAAGGTTGACAAGATTCAATCTGATATTGACAAACGTGGGACAGAGATTAACCGCTACAAAGTTCAAATTGAAACTGGTGAGAAAATGATCAAGAAGTTGAATAAAGGGATCGAGGATTCAAAGAAGGAAAAAGAATTGCTCATTCAGGAAAAGGAAATGCTACTTTCAACGTTTAAAGAGATTGAACAAAAGGCTTTTGTAGTTCAAGAGAACTTTAAAAAGACACAGCAGCTGATTGATGAACACAGGGAGGTTCTTGAGAAAGCAAAATCTGACTATGACAGTTCAAAGACGATAATGGATGAATTACGAGCAACTGAGGTTGATGCAGATTTCAAACTTAAAGATATGAAGAAACTTCACAAAGAGCTGGAAATGAAGGGAAGAGCGTACACCAAGAAGCTTGACAACCTTCAAAGTGCTCTCAAGAAGCATTTGGAACAAATTGTGAAAGATTCTGTGGACCATGAAAAGCTTCAGGCAACCTTGGCAGATGAGACGCTTGCCTTGCCTTGTGACCTTAAAAGGGCTCTGGAGATGGTGGCGTTGCTGGAAGCACAACTGAAAGAGATGAATCCAAATCTTGATTCAATCTCTGAATATCGACAAAAAGTGGCATCCTACGATGAACGGGTGGATGAACTTGATGCGGTTACTAAAGAACGTGATGACATCAAGAAGCAGTATGATGAATGGAGAAAGAAAAGGCTAGATGACTTCATGGCTGGATTTAATACCATATCTCTCAAATTGAAGGAAATGTATCAGATGATTACTCTTGGTGGAGATGCAGAGCTTGAGTTAGTGGATTCCTTGGATCCTTTCTCTGAAGGGGTTGTTTTCAGTGTGAGACCCCCAAAGAAGAGCTGGAAAAATATTGCAAATTTATCAGGTGGTGAAAAGACTCTCAGCTCTCTTGCTCTTGTTTTTGCACTTCATCACTACAAACCTACACCACTCTATGTCATGGATGAGATTGATGCTGCCCTTGATTTCAAGAATGTCTCGATTGTTGGGCATTATGTAAAGGATCGCACTAAAAATGCACAGTTCATAATCATAAGCCTCAGAAACAACATGTTTGAGCTGGCAGACAGGCTTGTTGGCATATATAAAACTGATAATTGCACAAAGAGTATAACGATTAACCCTAGTAGTTTTGTGCTCTGTCAGAAGGCTGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_119169.p1 GENE.R_Transcript_119169~~R_Transcript_119169.p1 ORF type:complete len:1254 (+),score=359.93,SMC_N|PF02463.15|2.2e-75,SMC_hinge|PF06470.9|1.4e+03,SMC_hinge|PF06470.9|3.5e+03,SMC_hinge|PF06470.9|1.4e-23,AAA_21|PF13304.2|1.5e-07,AAA_21|PF13304.2|1.3e+04,AAA_21|PF13304.2|5.4e+03,AAA_21|PF13304.2|1.6e-05,AAA_29|PF13555.2|9.2e-06 R_Transcript_119169:211-3972(+)
MGKEIEMEMEDNSTTTTSTPSESKNHSNSGTPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIIDLDDGEYEVVPGSEFVIARVAFRDNSSKYYINNKASNFTQVTTKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTNKYVEKIEDSRKQLESLNEKRSGVVQMVKLAEKERDSLEDVKNEAEGYMLKELSLLKWQEKATKLAAEDNNVKILELQSNLSSLEENLKSKRDEIRENTSNMKEIEALHNKYLKRQEELDNDLRACKEEFKEFERQDVKHREDLKHIKQKIKKLEDKIEKDFSKIDNFTKDSENASIMIPKLEGEIPELQKRLFDEDKLLEEIKENSKGETERFRAELANVRAELDPWENQQMDHKGKLEVASTEQKLLSEKHEDARKAFEDAQKQINDIAEKIKSKTSTITSIQNELEKNKRAASDARKVEEECVKEQEALIPLEQAARQKVAELVSVRESEKSQGSVLKEILQAKETNQINGIYGRMGDLGAIDAKYDVAISTACPGLDYILVETAEAAQKCVDLLRQKNLGVATFMILEKQERHRDLLKKKVNTPEGVPRLFDLIKVKDERLKVAFYELMRNTVVAKDLDQAARIAYGGNKEFRRVVTLDGALFEKSGTMSGGGSKPRGGKMGTSIFADTVSREAVANAERDLATMVDKLDAIRRRISDSVQSYQSLEKAIQNLEMELAKSQKEIDSLNTQHDYLKNQLDSLKSAAKPRKEEVSRLEELQKIIADEEKQIAILLQGSKQLKEKASDLQSKIENAGGERLRNQKGKVDKIQSDIDKRGTEINRYKVQIETGEKMIKKLNKGIEDSKKEKELLIQEKEMLLSTFKEIEQKAFVVQENFKKTQQLIDEHREVLEKAKSDYDSSKTIMDELRATEVDADFKLKDMKKLHKELEMKGRAYTKKLDNLQSALKKHLEQIVKDSVDHEKLQATLADETLALPCDLKRALEMVALLEAQLKEMNPNLDSISEYRQKVASYDERVDELDAVTKERDDIKKQYDEWRKKRLDDFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKNAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPSSFVLCQKAA*

Click here to download the sequence:
Link to NCBI Protein BLAST