Transcript Information: R_Transcript_119316.p1


Annotated TAIR IDAT5G04050.2
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1096092-1098512 | Forward length=695
E-Value2.3E-202
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1919037938951
Replicate 22.1485851462274
Replicate 32.6111307104423
Condition 2: 8 Hour
Replicate 13.0448743975849
Replicate 22.72269804802
Replicate 33.4798424505405
Condition 3: 24 Hour
Replicate 14.7878328544823
Replicate 22.5426399498204
Replicate 34.082680666986


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_119316.p1 GENE.R_Transcript_119316~~R_Transcript_119316.p1 ORF type:complete len:772 (+),score=148.18,Intron_maturas2|PF01348.17|3.3e-14 R_Transcript_119316:541-2856(+)
ATGCTCTTTCCTCTAACAAAGAAAATCATTCCAACCAGACCAACTACAAAATTATCACCATCATCAATTCTCTCTTCTTTCTCTTCCCTTTACTCAACTCTCTCTCATTCCCAAACCCTTTCCCCTGACACTCCAAACCCCACCACCACCTTAAACCCTCCCAAAACCCTAACCCAAACCCACCTCAAAACCCTAATCCTCTCCCACTATCACCATGGCAAATTTCACAACCTCCTCCAAAACGTCGTCGCTTCACCTTCTGTCCTCTTCACTGCCTCCCAAAACCTCTCAACCCGCTCCCCCCAACTCACCCTTGACTCACTCTCCCCTCATTTTGACCTCCGCCAACTTTCCCAAGATCTCACCTTTAACACCTTTGACCCCAAACCCTGTTGTGTTAGATTACAGCCCACTTGTAACAATCAAGCTAGGTCCCTTGTGTTGCCTAATTTGAAGCTTAAAGTTGTTATTGAAGCCTTGAGATTGGTTCTTGATGCTGTCTTTGATGGTGGGTTCACCACCTTTTGTTATGGTGGGGGCCGGGCCGGGCTGGGCCGGCACACTGCCATTCGGTACCTTAAGAACACTGTTGAGAACCCCAGTTGGTGGTTCACTGTTTCATTTCATCATAGCGCTTTGTTTGAATCTGGGCATGTGGGTAGGTTGTGTAGTGTAATTAGAGAGAAAATTGATGATAGGTTGCTGATTAATTTGATTGAGAGTTTGTTTGATTGTGGGGCGGTGAGGATCGAGTTTAGTGGGGGTTATTTAGGAAAAGGATTGCCTCAAGAATGTGGGTTATGTGGGATTTTGATGAATATATACTTGAATGGATTTGATAAGAAGTTACAAAAGATTCGCCTTCGGATGAATGAGGAGAATCCTAAGGTTGATGATGTGAGTAGTGTTGTTGTGTATAAGCCTGTGAAGGTGTATGCTGTACGGTACTTGAACGAGGTGCTGGTGATCACGTCTGGATCAAAGGTTTTAGCAGTGGATTTGTTGAATTGGGTTGTGAAGTACTTGGAGAATGAATTGGATTTGAAGGTGGATAGGTTGAGGACATCGATTCATAGTGCTGTTTCAGAGAAGATTGGTTTTTTGGGGATGGAACTTCAGGCTGTTCCGCCATCAGTCTTGAGGCCTCCCCTTTCGGAGAAAGCAATAAGGGCGAGGAAGAAGTACCGTAGGCAAAAGCAAGTTAGGTTATTGGAGTTGAGAAATGCGAGGGAGAGGAATCGGAGGAAGTTGGGGATGAAACTATTTAGTCATGTTTTTAAGAAGATCAAACAGAGTGGTGGGTTCAAGTTTGAGTACCAGATTGAAGATGAAGTGAGGGAGATATTCAGGACTTGGGCGGATGAAGTAGTGCAGGAATTCTTTGGGTCATTGGATGAACGATACAGTTGGCATCGACAGCTTACTGCTGGTGATTTTCTTTCCTTGAAAAGGATTAGGGACCAATTACCTGAAGAGCTTGTCGATGCCTATGATAAGTTCCAAGAGGAAGTTGATAAGCATTTGAATCCAATAAGTGCTAGGAAGGCCTTGGAGGAGGAAGAAAAGAAAGCAGAAGAGGAGGAGGAGAGGAAGTATAGTGACAGGACATTTGAGGATTTGACGAAACTATGCATGAAAGTAACGGCACCCATTGAGCTTGTTCGAAGGACTGTCAAGTTGGTGGGATTCACCAATAACATGGGTCGTCCTAGGCCTATTAGTATACTCGCTGCCCTTGAAGATGTTGATATTATAAAGTGGTATGCAGGAGTAGCAAGAAGGTGGCTCGACTACTTCTGCTGCTGTCGTAACTTTGATATGGTCAAAACTGTTGTAACCTATCACTTAAGATTCTCCTGTCTCTTGACATTAGCAGAAAAACATGAAGCCACAAAAGAGGAGACCATTAGGCATTTCTCAAAAGATTTGAAAGTCTTTGATGGATTTGAGCAAGTGTACTTCCCTACTGAAAGGGAGGTAAAAAGGACGGGAGATGGTTATTTTTCAGATCCAAAGCCTGTGGATGGTGCTTTAACCCTGTTTCTGCTCCGACTAGCATATGACGAACCATTATATAAATGTGCTGCTCATTTTTGTGATAGAAAGGACACGGTTACTTACCGAGTATGTTTACTGCAGAATCAGTTGAACATTGATCCAACGGATCAAAAGAAATGGGTGCCTGGAATGGCAGCAATCCATGAAAGCTTGGACAGAAAATGCTTCCCCCTCTGTGCTGATCATATTAGTGAACTTTATATGGGTAGATTATCATTACAAGATATTGACTGTACTTCATTCGTTGATGTTGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_119316.p1 GENE.R_Transcript_119316~~R_Transcript_119316.p1 ORF type:complete len:772 (+),score=148.18,Intron_maturas2|PF01348.17|3.3e-14 R_Transcript_119316:541-2856(+)
MLFPLTKKIIPTRPTTKLSPSSILSSFSSLYSTLSHSQTLSPDTPNPTTTLNPPKTLTQTHLKTLILSHYHHGKFHNLLQNVVASPSVLFTASQNLSTRSPQLTLDSLSPHFDLRQLSQDLTFNTFDPKPCCVRLQPTCNNQARSLVLPNLKLKVVIEALRLVLDAVFDGGFTTFCYGGGRAGLGRHTAIRYLKNTVENPSWWFTVSFHHSALFESGHVGRLCSVIREKIDDRLLINLIESLFDCGAVRIEFSGGYLGKGLPQECGLCGILMNIYLNGFDKKLQKIRLRMNEENPKVDDVSSVVVYKPVKVYAVRYLNEVLVITSGSKVLAVDLLNWVVKYLENELDLKVDRLRTSIHSAVSEKIGFLGMELQAVPPSVLRPPLSEKAIRARKKYRRQKQVRLLELRNARERNRRKLGMKLFSHVFKKIKQSGGFKFEYQIEDEVREIFRTWADEVVQEFFGSLDERYSWHRQLTAGDFLSLKRIRDQLPEELVDAYDKFQEEVDKHLNPISARKALEEEEKKAEEEEERKYSDRTFEDLTKLCMKVTAPIELVRRTVKLVGFTNNMGRPRPISILAALEDVDIIKWYAGVARRWLDYFCCCRNFDMVKTVVTYHLRFSCLLTLAEKHEATKEETIRHFSKDLKVFDGFEQVYFPTEREVKRTGDGYFSDPKPVDGALTLFLLRLAYDEPLYKCAAHFCDRKDTVTYRVCLLQNQLNIDPTDQKKWVPGMAAIHESLDRKCFPLCADHISELYMGRLSLQDIDCTSFVDVD*

Click here to download the sequence:
Link to NCBI Protein BLAST