Transcript Information: R_Transcript_119424.p1


Annotated TAIR IDAT5G07420.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:2349547-2351366 | Forward length=361
E-Value6E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4158330675363
Replicate 20.51461520628182
Replicate 31.4597430821077
Condition 2: 8 Hour
Replicate 10.84020124818979
Replicate 20.43844866355266
Replicate 31.334677251499
Condition 3: 24 Hour
Replicate 12.1382271437568
Replicate 20.97302612752547
Replicate 31.2875120404057


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_119424.p1 GENE.R_Transcript_119424~~R_Transcript_119424.p1 ORF type:3prime_partial len:204 (+),score=18.91,Pectinesterase|PF01095.15|1.7e-19 R_Transcript_119424:156-764(+)
ATGCACAATGCACATCTTCCATCACCAACAATATTAAAAAAAAATCTCATGGCTTCGGCCAAGCACCAATTTCTACCTTTTCTTTTGCCCCTCTTATTTCTTTTAGTACCCCAACTTTCATGGGGTAGTAAAGCTACTGATTCACAACAAGATTATGAGAAATGGCTAATGTGGAATGTCCAAAATCACCATTGGAGAAGGACTACTCTTATTGCTGATCAATCAAAGGTGGCGCCATCTCGGAATACTTCTACAAAGATTTTAGATTTGAAGCTGGAAAATGCAGAGATTAACAAGATAAGGATAGTTGTGAATCAAGATGGCATAGGAGATTACAAAACTATTGCCGATGCCCTCAACAGTATTCCACTACATAATACTAAGAGAGTTATCTTAGATATTAAGCCTGGTGTGTACAGGGAAAAAATACACATCCCTAAAACAAAGCCATTCATTACATTGTTGGGAGACCCGGGAAACCCACCAACCATCACGGGAAATGACACGGCCTCTATCATCCGAGGAGACGGCACGCGCTTGCGGACCTTCTTTAGCGCTACCGTTGCTGTTGATGCTTTCTACTTTGTTGCCCTCAACATCATATTTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_119424.p1 GENE.R_Transcript_119424~~R_Transcript_119424.p1 ORF type:3prime_partial len:204 (+),score=18.91,Pectinesterase|PF01095.15|1.7e-19 R_Transcript_119424:156-764(+)
MHNAHLPSPTILKKNLMASAKHQFLPFLLPLLFLLVPQLSWGSKATDSQQDYEKWLMWNVQNHHWRRTTLIADQSKVAPSRNTSTKILDLKLENAEINKIRIVVNQDGIGDYKTIADALNSIPLHNTKRVILDIKPGVYREKIHIPKTKPFITLLGDPGNPPTITGNDTASIIRGDGTRLRTFFSATVAVDAFYFVALNIIFE

Click here to download the sequence:
Link to NCBI Protein BLAST