Transcript Information: R_Transcript_119830.p1


Annotated TAIR IDAT1G27595.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:9596475-9602917 | Forward length=961
E-Value1E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.15468610978575
Replicate 20.17793474929066
Replicate 30.77649957953059
Condition 2: 8 Hour
Replicate 10.6225219901842
Replicate 21.705490987887
Replicate 30.61530883458939
Condition 3: 24 Hour
Replicate 11.3619038185926
Replicate 20.74763589459584
Replicate 31.1129341366219


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_119830.p1 GENE.R_Transcript_119830~~R_Transcript_119830.p1 ORF type:internal len:118 (+),score=32.43 R_Transcript_119830:3-353(+)
CGACAAGTTGACAAAATAATGAGAAATAATGAGCGCTTATCACGTGATGCTTGGGTTAAGGAGGATCAGCCATCCAGCCAGCAGCTATTATCCGGTGAAAGTATGAAGAGGAAGTTGGTGCCTTCTGATATTGAAGACCCTATTAATGGTCCAGAGATGGCTTCCAAACGCATGCATTTTACTTCAAATGGGAAGCCATCGGATCTGGTTCAGATGAATGAGTCTGGAGATGATAAGCACACTCTTAATGGGATATCTTCTAAAGTTCCAATGCTGAATTGTAATCTGAACCCTGTTGAGCAAATGATTGCTGTAATTGGTGCTTTACTAGCCGAAGGTGAAAGAGGTGCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_119830.p1 GENE.R_Transcript_119830~~R_Transcript_119830.p1 ORF type:internal len:118 (+),score=32.43 R_Transcript_119830:3-353(+)
RQVDKIMRNNERLSRDAWVKEDQPSSQQLLSGESMKRKLVPSDIEDPINGPEMASKRMHFTSNGKPSDLVQMNESGDDKHTLNGISSKVPMLNCNLNPVEQMIAVIGALLAEGERGA

Click here to download the sequence:
Link to NCBI Protein BLAST