Transcript Information: R_Transcript_119853.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value1E-34
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.1737918950026
Replicate 23.5258537764131
Replicate 35.07690931594
Condition 2: 8 Hour
Replicate 14.9638515929362
Replicate 25.5479343751202
Replicate 37.428155329523
Condition 3: 24 Hour
Replicate 19.1171322197766
Replicate 25.9058711401395
Replicate 38.6259411058045


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_119853.p1 GENE.R_Transcript_119853~~R_Transcript_119853.p1 ORF type:complete len:1322 (+),score=215.74,PIF1|PF05970.10|8.9e-103,Helitron_like_N|PF14214.2|1.6e-58,AAA_30|PF13604.2|3e-07 R_Transcript_119853:637-4602(+)
ATGGCGCACATAAGAGACAGCGGACCAATAATCATTGTACCTGGTGATGAGCAGCTGCCACAGATAAGTACCGATGGACTAGCTGCTGGGAGTGTGCTAACATCACAGGGACAGCAAATCAGGAGCCGCCGTGTATGGTCTGAAGGCCTTACACGCCGTGCACCCCCTGTCATACGTTCTGCGTCAAGTGCCCCAGTTCTCTCCATGGTGTCGCCGCTTGAGTTGCCACAGCCAACATTTTGCCATCACTGCTTAGCCAAGAAATTTGCCTTCGAGACAAAGAACTTCTGCTGTGGGGATGGGAAGGTTTGCATGGCAAACAATGAGTGGCCCCCTGAATTGAAGCGGCTATACACGTCGACAGATGAAGATGCTCTTCATTTCCAAAGATATGCAAGGATTTACAATAATCTCTTTGCTTTTAGCTCCATAGGTGGAGGAATGACTGCGGGCACTAAAAAAGGAATCTACGTTTTTCGATTGCAAGGGCAGTTGTATCATTTCGTTCCAAACTTAATTCCGCCTGATGGGAGGCCGAAATATCTCCAGCTTTACTTCTATGATGCGGAGCATGAAAAGGAGAACAGATTAGGCCAGCTACCTAATCTAAGAGCTGATGTCATGGAGACCCTAATGACCATCATGCAAGCTGCTAGCAGTGCTCGGGGGAAGAAGCGGACGATGATGTCGTGCCGAGAATACTATGCCTACAAACTTCAGATTCGCGAACGGAATCACCTTGTTAGAGCATGTAGGCTTTTCCAACAATTCATTGTTGACATGTACGTGAAACTCGAGAATACAAGGCTAGATTTCTTTCGCCAAAATCAGAGACTCATAAGGGCAGATTTGTATCAAGGCATCCTTGATTCTCTGGCTATTGGAGAGCAGAATGCAAATAATGTAGGGCACCGTGTTGTGCTACCACCAACTTTTATTGGTGGCCCAAGGGACATGAAGCGAAGATATTTTAATGCTATGGCCCTTGTTCAAAGGTATGGGAAGCCAGATATTTTCTTGACGATGACGTGCAACCCGAAATGGAAAGAGATTGAAGCTGAGCTGCACCCTGGTGAGAAGGTAGAGAATAGGCCTGATATAGTGGTGCAAATATTCAGAGCAAAACTGATGGTGCTCAAGAAAAAAATAATGGAGGAGGAGTTCTTTGGTCCTGTTGCTGGCATGATTTATGTGGTGGAATTTCAAAAGAGAGGGTTGCCACATGTGCACTTCCTTATAATCCTCGAACGCGCTCATAAAATCAAATCACCTGAGCAGTTTGATAAGTTTGTTTGCGCTGAGATTCCTTCGGAAGACAAACCATATTTGAGGTTGCTGGTTCTCAAGCATATGATGCATGGACCTTGTGGAAGTATGTTCCCAGATTGTCCATGTATGCAGCATAAGGGAGATGTGAAAAAGTGCCGCAGCAACTACCCGAAAAAACATGCTGAGTTTACCACTAATAATTCGGATGGATATCCTCTGTACAGAAGGAGGCAAACTGGTGAAAGTGTAACTGTCAGGAAGTTTTCAATGGACAATCGATGGGTTATTCCTTACAATGCAGAGTTGCTTGCGCAGTTTGATTGTCACCTAAATGTTGAGGTTTGCTCTACCATAACTGCTGTCAAATATTTGTACAAATATGTGTACAAGGGCCATGACAAAGTATCATTCTCATTAACTCCAACTGAGAAGCAGGTTGATGAGATCTATACGTTCCAGGCAGGAAGGTGGGTGTCACCTCCAGAAGCAGCATGGCGCCTCTTTGGCTTTGATTTGTATGATATGGTGCCTTCTGTGCTCCCTTTACAAGTGCATTTACCCAATAAACAATGTGTTTCGTTCGCTCCCAATGAAGCCGTGCAGTATATTGCTCATAACAGCCACAAATACGACTCACAATTGACAGCATTCTTCAAGATGAATGCAGCAAGGTCGAAGCGATCAGACATGCTATACTCGCACTGCCCAGAGAAGTTTGTTTGGAATAAGGAACAAAAAACCTGGACACCTCGGATAGGGAGAGTGCAGGTTGGACGCCTTGTATTTGTGAGCCCCGAAGAAGGAGAGCGATACTTCCTCCGGTTGCTGTTGTGTCATGTTCCTGGCCCAACCTCTTTTACTGACTTGCTGACTGTTGACGGCACAACATGGCAGACATTTAAGCAAGCCTCTATCAAGAGAGGGCTGGTTGAAGCTGATGATGCAATCGACCAGTGCTTGAAAGAAGCTGCTGAGTTCCAAATGCCAAAAGCTTTTCGCCAGCTTTTTGCAACAACATTGATATTCTCGCAACCTGCTGAGCCGAGGGTGTTATGGGAGAAATACTTCACTGCTCTATCAGAAGATTTCAGCCACGCTCATCCAGGTGACTATAGAAGAGTACTCCATTTAACATGCAAAGATGTTGAGCAGATGATGAAGCCTTCTGGGAAAAGTTTCACAGACTTTGATCTAGCAGATCTGCACAACATTGCTGAGCAGCAACAAAATTTCAATTGTTCCAGGGAGGTAATTGATGCGCTCACAGCACCTGTCCCTTCAAATTTTGTGGGCTTATGGAATAGGCTTAATGCAAAACAAAAAGAAGCCTATAAATCAATAATCGGATGTGTGAAACAAAACAAGGGTGGAGTGTTCCCGGGAGGAACTGGGAAGACATTTCTTTATTGTGCTATATATGCAAAGGTTAGATTGATGGACAAGATCGTCGTTGCCACGGCAAGTTCAGGAATCGCTGCTTCCAATATTCCGAGTGGCCGCACAGCCCATTCGCGTTTCAAGATTCCGCTAGACGCCGACACTTCACTGGCCTGCAGCGTGGCAAAACAAAGTGACCTAGCGCAGCTTCTCCGAGAGGCTGCTCTTATCATTTGGGATGAGGCATCCATGGCAAGAAAAGAGAATGTAGAGGCTGTTGATAGGTTGCTGCGAGATATTTGCAGCTGCCCACAACCTTTTGGCGGCAAGGTATTTGTTTTTGGTGGTGATTTCAGACAAGTTCTGCCTGTGATTCCCAAACGAGCACAGCATGAGCTGGTCGACGCCAGTCTTGTTAGCTCCTACTTATGGCCACTTTTCAGGCGGTTTACACTTGTTGAGAACATGCGTGCCAAAGAAGACCCAGAGTTCACTGCTTTCCTTCTTAAGCTTGGCAATGGTGAGTTCCAAAGTACTGAGCAAGCAGTTGTTCCGCTGCCTTCCTCAGTTCTGTGTAAGCTCCCCCACACTGCAAACTGCTTAGAGTATCTTGTTGCTTCAGTGTACCCAGACATTGATGAACTTGCAGCTAATCCTCATGCATTTACCGCAAGGGCAACATTGACTCCTACGAACGATGAAGTTGATTGCATCAACAAAATTGTCATAGAAAAGTTTCCTGGCCAAGATTATGTTTACAAGAGCTACGACACAATGATAGATGATGACTGCAATGCTCACCCGGTTGAGTTTCTCAACACACTGTGTCCAGGAGGAATGAGTCCACACAATCTAATACTGAAGCTTAATTGTCCGGTCATATTGCTCAGAAATTTGAACCCATCTATTGGGCTGTGTAATGGCACAAGACTGATTTGTAGAGGATTCAAATGCAATGTTGTCGTTTGCGAGATAGCAACGGGATATCGAGCAGGTGAATATGTCTTCATCCCACGCATAAGTTTGAGACCTTCAGCCTCTATTACATATCCATACAAGTTTGAAAGGCGACAATTCCCAATCAAATTGTGTTTCGCGATGACAATTAACAAATCCCAAGGCCAAACACTCACAGATGTAGCAATCTACCTACGGAGGCCATGTTTTTCACACGGGCAGCTCTATGTTGCTCTATCTAGAGCTAAGAAGGCCACCAGTGTGAAGGTCTTCGTTGATGACAAACAGGAGGATAATTCAGCTCCACCCCTTGTCTGTAATGTTGTATCGTTTGACCTACTGAGGAAGGCAGGGATACTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_119853.p1 GENE.R_Transcript_119853~~R_Transcript_119853.p1 ORF type:complete len:1322 (+),score=215.74,PIF1|PF05970.10|8.9e-103,Helitron_like_N|PF14214.2|1.6e-58,AAA_30|PF13604.2|3e-07 R_Transcript_119853:637-4602(+)
MAHIRDSGPIIIVPGDEQLPQISTDGLAAGSVLTSQGQQIRSRRVWSEGLTRRAPPVIRSASSAPVLSMVSPLELPQPTFCHHCLAKKFAFETKNFCCGDGKVCMANNEWPPELKRLYTSTDEDALHFQRYARIYNNLFAFSSIGGGMTAGTKKGIYVFRLQGQLYHFVPNLIPPDGRPKYLQLYFYDAEHEKENRLGQLPNLRADVMETLMTIMQAASSARGKKRTMMSCREYYAYKLQIRERNHLVRACRLFQQFIVDMYVKLENTRLDFFRQNQRLIRADLYQGILDSLAIGEQNANNVGHRVVLPPTFIGGPRDMKRRYFNAMALVQRYGKPDIFLTMTCNPKWKEIEAELHPGEKVENRPDIVVQIFRAKLMVLKKKIMEEEFFGPVAGMIYVVEFQKRGLPHVHFLIILERAHKIKSPEQFDKFVCAEIPSEDKPYLRLLVLKHMMHGPCGSMFPDCPCMQHKGDVKKCRSNYPKKHAEFTTNNSDGYPLYRRRQTGESVTVRKFSMDNRWVIPYNAELLAQFDCHLNVEVCSTITAVKYLYKYVYKGHDKVSFSLTPTEKQVDEIYTFQAGRWVSPPEAAWRLFGFDLYDMVPSVLPLQVHLPNKQCVSFAPNEAVQYIAHNSHKYDSQLTAFFKMNAARSKRSDMLYSHCPEKFVWNKEQKTWTPRIGRVQVGRLVFVSPEEGERYFLRLLLCHVPGPTSFTDLLTVDGTTWQTFKQASIKRGLVEADDAIDQCLKEAAEFQMPKAFRQLFATTLIFSQPAEPRVLWEKYFTALSEDFSHAHPGDYRRVLHLTCKDVEQMMKPSGKSFTDFDLADLHNIAEQQQNFNCSREVIDALTAPVPSNFVGLWNRLNAKQKEAYKSIIGCVKQNKGGVFPGGTGKTFLYCAIYAKVRLMDKIVVATASSGIAASNIPSGRTAHSRFKIPLDADTSLACSVAKQSDLAQLLREAALIIWDEASMARKENVEAVDRLLRDICSCPQPFGGKVFVFGGDFRQVLPVIPKRAQHELVDASLVSSYLWPLFRRFTLVENMRAKEDPEFTAFLLKLGNGEFQSTEQAVVPLPSSVLCKLPHTANCLEYLVASVYPDIDELAANPHAFTARATLTPTNDEVDCINKIVIEKFPGQDYVYKSYDTMIDDDCNAHPVEFLNTLCPGGMSPHNLILKLNCPVILLRNLNPSIGLCNGTRLICRGFKCNVVVCEIATGYRAGEYVFIPRISLRPSASITYPYKFERRQFPIKLCFAMTINKSQGQTLTDVAIYLRRPCFSHGQLYVALSRAKKATSVKVFVDDKQEDNSAPPLVCNVVSFDLLRKAGIL*

Click here to download the sequence:
Link to NCBI Protein BLAST