Transcript Information: R_Transcript_119860.p1


Annotated TAIR IDAT5G28780.1
Annotated Gene NamePIF1 helicase
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:10812907-10814173 | Reverse length=337
E-Value4E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.02869927346
Replicate 22.0903396432155
Replicate 32.5846097730172
Condition 2: 8 Hour
Replicate 12.6544411115376
Replicate 23.8587362469303
Replicate 35.8631308641073
Condition 3: 24 Hour
Replicate 15.3331189356392
Replicate 22.4885358482731
Replicate 35.1813814192434


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_119860.p1 GENE.R_Transcript_119860~~R_Transcript_119860.p1 ORF type:complete len:452 (+),score=72.03,PIF1|PF05970.10|6.7e-105,AAA_30|PF13604.2|8.8e-06 R_Transcript_119860:745-2100(+)
ATGATGAAGCCTTCCGGAAAAAGTTTTCTGGACTTTGATCTTTTGGATCTGCATAGGATAGCTCAGGAAGAGCAACATTTGTCATGTTCAAGAGAGGTGATTGATGCTCTTGCAGCTCCTGTTCCCCCAGAATTTGTAGGTTTGTGGAAGAAATTGAATGTGCAGCAAAGACAAGCTTATAAATCAATAATCAGGTGTATTAAGCAAAATGAATCTGGGGTTTTTTTCATCGATGGGCCTGGAGGAACAGGAAATACTTTTTTGTATTGTGCTATCTATGCAAAAGTTCGATTGATGAACAAAATTGTGGTTGCTACTGCAAGTTCAGGAATTGCTGCTTCCAACATTCCAAGTGGCCGAACGGCTCATTCAAGGTTCAAGATTCCCCTAGATGCAGACAATTCATTGGTTTGCAATGTTGCAAAGCAAAGTGATCTAGCGCAACTTCTAAGAGAGGCTGCTCTTATCATTTGGGATGAAGCGTCAATGGCCAGAAAAGAAAATGTGGAAAGTGTTGACTGGCTGTTACAGGACATGTGCAGCTGCTCACAACCCTTTGGGGGCAAAGTATTTGTGTTTGGTGGTGATTTTAGGCAAGTGTTGCCTGTCATTCCTAAACGAGCCCAGAATGAACTGGTGGAGGCTAGCCTTGTTAGCTCATACTTGTGGCCGATTTTCAACCGATTCACACTTGTTGAGAACATGCGTGCTAAAGAAGATCCTGAATTCACAGCTTTCCTCCTTAAGCTGGGCAATGGTGAATTCCAGAAGACCGAGCAGGCAGCTATTACACTACACACCTCACTTCTATGTAAACTCCCACCAACTGAAAATTGCTTGGACTACCTTGTGGCTTCGGTGTATCCAGATATCAATGAACTGGCAGCTAATCCTCATGCATTCACCGCACGAGCAACATTAACTCCAACCAATGATGAAGTTGATTGTATCAACAAACTTGTCATAGACAAGTTCCCAGGAGAGCCATGTGTTTACAAGAGCTACGATACTACGATAGATGATGATTGTAATGCCCATCCTGTTGAATTTCTAAACACCCTATGTCCAGGAGGGATGAGTTCCCATAACTTAATACTGAAGCTCAATTGCCCGGTCATACTGCTTCGAAATCTAAACCCAGCCATTGGCTTGTGTAATGGAACAAGACTCATTTGCAGAGGATTCAAGTCCAACGTTGTTATTTGTGAGATATCAACAGGTTATCGAGCTGGTGAATATGTCTTCATACCACGCATAAGCTTGAGGCCATCAGCCTCCATTACATATCCTTACAAGTTTGAAAGAAGGCAATTTCCAATCAAATTGTGTTTCGCAATGACAATTAACAAGTCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_119860.p1 GENE.R_Transcript_119860~~R_Transcript_119860.p1 ORF type:complete len:452 (+),score=72.03,PIF1|PF05970.10|6.7e-105,AAA_30|PF13604.2|8.8e-06 R_Transcript_119860:745-2100(+)
MMKPSGKSFLDFDLLDLHRIAQEEQHLSCSREVIDALAAPVPPEFVGLWKKLNVQQRQAYKSIIRCIKQNESGVFFIDGPGGTGNTFLYCAIYAKVRLMNKIVVATASSGIAASNIPSGRTAHSRFKIPLDADNSLVCNVAKQSDLAQLLREAALIIWDEASMARKENVESVDWLLQDMCSCSQPFGGKVFVFGGDFRQVLPVIPKRAQNELVEASLVSSYLWPIFNRFTLVENMRAKEDPEFTAFLLKLGNGEFQKTEQAAITLHTSLLCKLPPTENCLDYLVASVYPDINELAANPHAFTARATLTPTNDEVDCINKLVIDKFPGEPCVYKSYDTTIDDDCNAHPVEFLNTLCPGGMSSHNLILKLNCPVILLRNLNPAIGLCNGTRLICRGFKSNVVICEISTGYRAGEYVFIPRISLRPSASITYPYKFERRQFPIKLCFAMTINKS*

Click here to download the sequence:
Link to NCBI Protein BLAST