Transcript Information: R_Transcript_120408.p1


Annotated TAIR IDAT5G52450.1
Annotated Gene NameMATE efflux family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21289042-21291749 | Reverse length=486
E-Value5.4E-197
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.67603559091551
Replicate 20.21601132115533
Replicate 30.65986486902497
Condition 2: 8 Hour
Replicate 10.30229462897834
Replicate 20.4140904044664
Replicate 30.48553690959883
Condition 3: 24 Hour
Replicate 10.51962115124433
Replicate 20.363049529063
Replicate 30.63051001155671


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_120408.p1 GENE.R_Transcript_120408~~R_Transcript_120408.p1 ORF type:3prime_partial len:486 (+),score=57.97,MatE|PF01554.14|1.1e-32,MatE|PF01554.14|5.1e+03,MatE|PF01554.14|1.1e-27 R_Transcript_120408:77-1456(+)
ATGGACAAACAAGATGCAATTGAAGGAGCATCATTAGTTTTGCCTCTAAGCACACCACTAATCCAAGACCAACAGCATCAGATTGAAGAATCAAATGGTGATGAAGTTGATGATTATCATGATGTAAAGCTCATTAACAAATGGGGAATTAATGATTTTGGGGAAGAAGCTAAGAAACAAGTATGGCTAGCAGGTCCATTAATATTAGTTGGGCTCTTAACATATTCATTGCATATAATATCTCTGATGTTTGTTGGTCATCTTGGGGAGTTGACTCTTTCTGGTGCTTCTATGGCCACTTCCTTTGCTTATGTCACTGGTTTCAGCTTCTTGTTAGGATTGGCAAGTGCATTGGAAACCATATGTGGCCAGTCATTTGGTGCAGAACAATACCATATGGTAGGCATAAACACGCAAAGGGCCATGGTTGTGCTTTTGCTGGTAAGCATACCGATATCTATAGTCTGGGCAAACACCGGATCCATACTACTTGTTCTAGGACAAGACGAGAGGATATCAAAAGAAGCCGGAAACTATATCCTCATGATGATGCCTAGTCTCTTTGCCTATAGCCTTCTTCAATGCTTTTTTCGATTCTTTCAAACCCAAAACGTCATCTTTCCAATGCTGCTCAGCTCTGGAATCACTACCTTATTGCACATATTCATATGTTGGACTTTGGTATTTAAATCTGGTCTCGGAAGCAGAGGAGCTGCCCTAGCCAACACTATTTCATACTGGATTAATCTAATCATATTGGTCCTTTATGTGAAATTTTCTTCCTTGTTCTCAAAGACTTGGACCGGCTTCTCAAATGCAGCGTTTCAAGGTATCCCATCATTTCTGAGGCTTGCTATTCCCTCGACTTTCATGGTCTGCTTGGAACTTTGGTCCTTCGAGATGCTAGTTTTCTTGTCTGGTCTTCTACCCAGTCCACAATTAGAAACTTCAGTTCTATCTATCTGTGTTAACACTACTTCAATTGTTTGGGTTATTCCTGAAGGTCTCAGTGGAGCTGTCAGCACTCGCATATCCAACGAGTTGGGAGCTAGGAATCCACGAGGGGCAAGCTTAGCAATACGGGTTGCATTATGCATGACAATCTTGGAGAGCATTCTTGTTGGCTTAGTCTTGTTACTCATACGAGATGTTTGGGGCTATGCTTACAGCAGTGAGATGGAAGTGGTCAGATTTTTAGCTGCTATGATGCCCTTATTAGCTGCAACCAATTTCCTGGATGGCCTAACATGTGTCCTCTCTGGTGCTGCTAGAGGATGTGGTTGGCAGAAACTTGGTGCATATATCAATCTAGCATCATTCTACGTCGTTGGCTTTCCTGTTGGTATTCTTTTAGCCTTCATCATGCACATTGGAGGAAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_120408.p1 GENE.R_Transcript_120408~~R_Transcript_120408.p1 ORF type:3prime_partial len:486 (+),score=57.97,MatE|PF01554.14|1.1e-32,MatE|PF01554.14|5.1e+03,MatE|PF01554.14|1.1e-27 R_Transcript_120408:77-1456(+)
MDKQDAIEGASLVLPLSTPLIQDQQHQIEESNGDEVDDYHDVKLINKWGINDFGEEAKKQVWLAGPLILVGLLTYSLHIISLMFVGHLGELTLSGASMATSFAYVTGFSFLLGLASALETICGQSFGAEQYHMVGINTQRAMVVLLLVSIPISIVWANTGSILLVLGQDERISKEAGNYILMMMPSLFAYSLLQCFFRFFQTQNVIFPMLLSSGITTLLHIFICWTLVFKSGLGSRGAALANTISYWINLIILVLYVKFSSLFSKTWTGFSNAAFQGIPSFLRLAIPSTFMVCLELWSFEMLVFLSGLLPSPQLETSVLSICVNTTSIVWVIPEGLSGAVSTRISNELGARNPRGASLAIRVALCMTILESILVGLVLLLIRDVWGYAYSSEMEVVRFLAAMMPLLAATNFLDGLTCVLSGAARGCGWQKLGAYINLASFYVVGFPVGILLAFIMHIGGK

Click here to download the sequence:
Link to NCBI Protein BLAST